Align 4-hydroxy-tetrahydrodipicolinate synthase; HTPA synthase; EC 4.3.3.7 (characterized)
to candidate 5209914 Shew_2362 dihydrodipicolinate synthase (RefSeq)
Query= SwissProt::Q57695 (289 letters) >FitnessBrowser__PV4:5209914 Length = 304 Score = 150 bits (380), Expect = 3e-41 Identities = 90/287 (31%), Positives = 159/287 (55%), Gaps = 4/287 (1%) Query: 2 FKGVYPAIITPFKNK-EVDFDGLEENINFLIENGVSGIVAVGTTGESPTLSHEEHKKVIE 60 ++GV+PAI T F + ++++ + LI +G+ G++A+GT GE+ +LS EE ++ I+ Sbjct: 5 WQGVFPAISTQFNDDGSINYESNARMLEDLIRDGIDGVIALGTIGENASLSPEEKREFIK 64 Query: 61 KVVDVVNGRVQVIAGAGSNCTEEAIELSVFAEDVGADAVLSITPYYNKPTQEGLRKHFGK 120 V+ VNGR+ V++G N ++A + + E +G D ++ + + T + H+ Sbjct: 65 HTVETVNGRILVLSGCTENTAQQAAKYAQDVEALGVDGLMLLPAMVYRGTDREVIAHYQH 124 Query: 121 VAESINLPIVLYNVPSRTAVNLEPKTVKLLAEEYSNISAVKEANPNLSQVSEL--IHDAK 178 VA S LPI++YN P V++ + +LAEE NI A+KE+ + +++EL + Sbjct: 125 VARSTKLPIMIYNNPVGYGVDINLEMTAVLAEE-PNIVAIKESTTDTRRLTELQSRFGDR 183 Query: 179 ITVLSGNDELTLPIIALGGKGVISVVANIVPKEFVEMVNYALEGDFEKAREIHYKLFPLM 238 +L G D++ L I LG G IS + N+ P+E V + A G E+AREI+ PL+ Sbjct: 184 FNILCGVDDIALESILLGATGWISGLTNVFPRESVTLFKLARAGRIEEAREIYRWFMPLL 243 Query: 239 KAMFIETNPIPVKTALNMMGRPAGELRLPLCEMSEEHKKILENVLKD 285 + I T +K A ++GR + +RLP + + + +E V+ + Sbjct: 244 RLDTIPTLVQCIKFAEQIVGRGSENVRLPRMTLIGDERAYVEKVMAE 290 Lambda K H 0.315 0.135 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 215 Number of extensions: 9 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 289 Length of database: 304 Length adjustment: 26 Effective length of query: 263 Effective length of database: 278 Effective search space: 73114 Effective search space used: 73114 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 48 (23.1 bits)
Align candidate 5209914 Shew_2362 (dihydrodipicolinate synthase (RefSeq))
to HMM TIGR00674 (dapA: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7))
../bin/blast/fastacmd -i /tmp/list.4509.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.4509.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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