Align 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (characterized)
to candidate 5210195 Shew_2638 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase (RefSeq)
Query= CharProtDB::CH_024869 (274 letters) >FitnessBrowser__PV4:5210195 Length = 274 Score = 456 bits (1172), Expect = e-133 Identities = 225/274 (82%), Positives = 247/274 (90%) Query: 1 MQQLQNIIETAFERRAEITPANADTVTREAVNQVIALLDSGALRVAEKIDGQWVTHQWLK 60 M+ L+ IETAFE RAEITP + R V + IA+LD+G RVAEKIDGQW HQWLK Sbjct: 1 MEALRQRIETAFEARAEITPTTVEPSVRADVEKAIAMLDTGEARVAEKIDGQWNVHQWLK 60 Query: 61 KAVLLSFRINDNQVIEGAESRYFDKVPMKFADYDEARFQKEGFRVVPPAAVRQGAFIARN 120 KAVLLSFRI DNQVI+GAE+++FDKVPMKFADYDEARF++E RVVPPAAVR+G+FI +N Sbjct: 61 KAVLLSFRIFDNQVIDGAETKFFDKVPMKFADYDEARFKQEAIRVVPPAAVRKGSFIGKN 120 Query: 121 TVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIED 180 TVLMPSYVN+GAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQA PTIIED Sbjct: 121 TVLMPSYVNLGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQAGPTIIED 180 Query: 181 NCFIGARSEVVEGVIVEEGSVISMGVYIGQSTRIYDRETGEIHYGRVPAGSVVVSGNLPS 240 NCFIGARSE+VEGV+VEEGSVISMGVYIGQSTRIYDRETGEIHYGRVPAGSVVVSG LPS Sbjct: 181 NCFIGARSEIVEGVVVEEGSVISMGVYIGQSTRIYDRETGEIHYGRVPAGSVVVSGTLPS 240 Query: 241 KDGKYSLYCAVIVKKVDAKTRGKVGINELLRTID 274 + GKY+LY A+IVKKVDAKTRGKVGINELLR +D Sbjct: 241 QCGKYNLYAAIIVKKVDAKTRGKVGINELLRIVD 274 Lambda K H 0.318 0.136 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 339 Number of extensions: 5 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 274 Length of database: 274 Length adjustment: 25 Effective length of query: 249 Effective length of database: 249 Effective search space: 62001 Effective search space used: 62001 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 47 (22.7 bits)
Align candidate 5210195 Shew_2638 (2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase (RefSeq))
to HMM TIGR00965 (dapD: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117))
../bin/blast/fastacmd -i /tmp/list.17449.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.17449.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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