Align Cystathionine gamma-synthase; CGS; O-succinylhomoserine (thiol)-lyase; EC 2.5.1.48 (characterized)
to candidate 5208004 Shew_0520 O-succinylhomoserine (thiol)-lyase (RefSeq)
Query= SwissProt::P00935 (386 letters) >FitnessBrowser__PV4:5208004 Length = 388 Score = 461 bits (1186), Expect = e-134 Identities = 235/381 (61%), Positives = 286/381 (75%), Gaps = 1/381 (0%) Query: 3 RKQATIAVRSGLNDDEQYGCVVPPIHLSSTYNFTGFNEPRAHDYSRRGNPTRDVVQRALA 62 RK AT AVR G+ D Q+G VVPPI+LS+ Y+F G +PRA DYSR GNPTR ++ A+A Sbjct: 4 RKLATAAVRRGIESDTQHGAVVPPIYLSTNYSFEGHQQPRAFDYSRSGNPTRSILGDAIA 63 Query: 63 ELEGGAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFV 122 ELE GA V+T TGM+AI LVT++ L P DLLV PHDCYGGSYRLF +LAK+G +++L V Sbjct: 64 ELEQGATGVVTCTGMAAITLVTSL-LGPEDLLVVPHDCYGGSYRLFTNLAKKGAFKLLVV 122 Query: 123 DQGDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQ 182 DQ DE+AL AL + PK+V +E+PSNPLLRVVDI I + +VGA VVDNTFLSP LQ Sbjct: 123 DQTDERALEQALTQSPKMVWLETPSNPLLRVVDIEAIAQASHKVGAQVVVDNTFLSPVLQ 182 Query: 183 NPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLL 242 PL LGAD+V+HS TKY+NGHSDVV G V+AKDP+V L WW+N +G+TG AFDSYL L Sbjct: 183 QPLQLGADIVVHSTTKYINGHSDVVGGAVVAKDPEVGELLHWWSNTLGLTGSAFDSYLTL 242 Query: 243 RGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSF 302 RGLRTL R+ Q NAQ ++ L V+K+Y+P L E+ GHEIAARQQKGFGAMLSF Sbjct: 243 RGLRTLAVRIREHQANAQKVLALLCDHKAVEKVYYPGLAEHPGHEIAARQQKGFGAMLSF 302 Query: 303 ELDGDEQTLRRFLGGLSLFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRI 362 EL G E L FL L F++AESLGGVESL++ ATMTH M P+AR AG+ +TL+R+ Sbjct: 303 ELKGGESALVAFLDALQYFSVAESLGGVESLVAVPATMTHRAMDPDARREAGVKDTLIRL 362 Query: 363 STGIEDGEDLIADLENGFRAA 383 S GIEDGEDL+AD+ G AA Sbjct: 363 SVGIEDGEDLVADILAGLEAA 383 Lambda K H 0.319 0.136 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 431 Number of extensions: 10 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 386 Length of database: 388 Length adjustment: 30 Effective length of query: 356 Effective length of database: 358 Effective search space: 127448 Effective search space used: 127448 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 50 (23.9 bits)
Align candidate 5208004 Shew_0520 (O-succinylhomoserine (thiol)-lyase (RefSeq))
to HMM TIGR02080 (metB: O-succinylhomoserine (thiol)-lyase (EC 2.5.1.48))
../bin/blast/fastacmd -i /tmp/list.20305.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.20305.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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