Align glutamate 5-kinase (EC 2.7.2.11) (characterized)
to candidate 5210407 Shew_2848 gamma-glutamyl kinase (RefSeq)
Query= BRENDA::P0A7B5 (367 letters) >FitnessBrowser__PV4:5210407 Length = 374 Score = 445 bits (1145), Expect = e-130 Identities = 226/360 (62%), Positives = 286/360 (79%), Gaps = 1/360 (0%) Query: 7 LVVKLGTSVLTGGSRRLNRAHIVELVRQCAQLHAAGHRIVIVTSGAIAAGREHLGYPELP 66 +VVKLGTSVLT GSR+L++AH+VEL RQ A+L +G +V+ TSGAIAAGREHLGYP LP Sbjct: 13 VVVKLGTSVLTSGSRQLDKAHMVELARQMAKLMKSGVEVVLCTSGAIAAGREHLGYPTLP 72 Query: 67 ATIASKQLLAAVGQSRLIQLWEQLFSIYGIHVGQMLLTRADMEDRERFLNARDTLRALLD 126 T+A+KQLLAAVGQS+LI W QLFSIYG+HVGQ+LLTRAD+ DRER+LNARD+L ALL Sbjct: 73 DTVANKQLLAAVGQSQLILAWSQLFSIYGLHVGQLLLTRADLHDRERYLNARDSLNALLA 132 Query: 127 NNIVPVINENDAVATAEIKVGDNDNLSALAAILAGADKLLLLTDQKGLYTADPRSNPQAE 186 N I+P+INENDAVAT EIKVGDNDNLSA AA+L AD L+LLTDQKGL+ ADPR+NP A+ Sbjct: 133 NGIIPIINENDAVATNEIKVGDNDNLSARAALLCDADLLILLTDQKGLFDADPRANPDAK 192 Query: 187 LIKDVYGIDDALRAIAGDSVSGLGTGGMSTKLQAADVACRAGIDTIIAAGSKPGVIGDVM 246 LIK V IDD+LR++AG +VSGLGTGGM+TKLQAAD+A RAG++ +IA+G P VI D + Sbjct: 193 LIKQVVNIDDSLRSLAGGAVSGLGTGGMATKLQAADIARRAGVEVVIASGHHPKVILDAV 252 Query: 247 EGISVGTLFHAQATPLENRKRWIFGAPPA-GEITVDEGATAAILERGSSLLPKGIKSVTG 305 + VGT F A PLE+RK+WI P G + +D GA A+ +G SLL KGI SV+G Sbjct: 253 CQLPVGTHFTALENPLESRKQWILAGPATKGRLVLDSGAINAVTLKGRSLLSKGIVSVSG 312 Query: 306 NFSRGEVIRICNLEGRDIAHGVSRYNSDALRRIAGHHSQEIDAILGYEYGPVAVHRDDMI 365 F RG +++ + +GR+ A G+SRY++ L++IAG HS EI+++LGY+YG VHR+DM+ Sbjct: 313 VFDRGATLQLVDEQGREHARGMSRYSAKDLQKIAGKHSDEIESLLGYDYGDAIVHRNDMV 372 Lambda K H 0.318 0.135 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 426 Number of extensions: 11 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 367 Length of database: 374 Length adjustment: 30 Effective length of query: 337 Effective length of database: 344 Effective search space: 115928 Effective search space used: 115928 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 49 (23.5 bits)
Align candidate 5210407 Shew_2848 (gamma-glutamyl kinase (RefSeq))
to HMM TIGR01027 (proB: glutamate 5-kinase (EC 2.7.2.11))
../bin/blast/fastacmd -i /tmp/list.21833.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.21833.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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