Align Pyrroline-5-carboxylate reductase; P5C reductase; P5CR; EC 1.5.1.2; PCA reductase (uncharacterized)
to candidate 5210588 Shew_3016 pyrroline-5-carboxylate reductase (RefSeq)
Query= curated2:P52053 (272 letters) >FitnessBrowser__PV4:5210588 Length = 264 Score = 194 bits (494), Expect = 1e-54 Identities = 109/262 (41%), Positives = 159/262 (60%), Gaps = 8/262 (3%) Query: 14 MVRAIVSGLVANGYPAQNITATAPSEARRLPLEQDFGIRTTSDNIQAATEADVVVLSVKP 73 M AI+ GL+ +G+ + +I APS+ R L QDF +R SDN A AD+++L+VKP Sbjct: 1 MASAIIRGLIKHGHRSAHILVCAPSQRTRSRLVQDFNVRVHSDNSAAVAFADIIILAVKP 60 Query: 74 QMMADVCKPLQAI-------DFTNKLVISIAAGINCSRLDDMLATKLNLVRVMPNTPSQL 126 ++ VC L+ + KL+ISIAAG+ + + D L + LV MPN P+ + Sbjct: 61 FIVPLVCDELRPLLGQVNNGRSEQKLLISIAAGLTHASISDKLPQNVQLVCAMPNLPTAI 120 Query: 127 GLGMSGLFAPIHVTEHDKAFAAELMEAVGKVCWVEQESGINNVIAAAGSAPAYFFLFMEA 186 G G++GLF P H+ A +LM AVG W+E E + +++A AGS+PAYFFLF+EA Sbjct: 121 GKGLTGLFVPGHLDRQAVDDAEQLMRAVGDTVWLEDEQQMASIVATAGSSPAYFFLFLEA 180 Query: 187 MQAEAIAQGFDKESARLLVQQAALGAASMVVSNPETELSTLRENVTSKGGTTAEALRTFN 246 M+ AIAQG ++A V Q+A+GA SM +++ E L+ LR VTS GTT +A+ F Sbjct: 181 MEKAAIAQGLPAKTASKAVLQSAMGAVSMAMASKE-GLANLRHQVTSPKGTTEQAVLAFQ 239 Query: 247 EHQLSDIVAKAMQAAVARAEEM 268 L +VA+AM +A RA+E+ Sbjct: 240 HGDLDALVARAMDSAARRAKEL 261 Lambda K H 0.317 0.129 0.353 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 128 Number of extensions: 4 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 272 Length of database: 264 Length adjustment: 25 Effective length of query: 247 Effective length of database: 239 Effective search space: 59033 Effective search space used: 59033 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 47 (22.7 bits)
Align candidate 5210588 Shew_3016 (pyrroline-5-carboxylate reductase (RefSeq))
to HMM TIGR00112 (proC: pyrroline-5-carboxylate reductase (EC 1.5.1.2))
../bin/blast/fastacmd -i /tmp/list.14696.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.14696.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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