Align dihydroxyacid dehydratase (characterized)
to candidate 5207771 Shew_0292 dihydroxy-acid dehydratase (RefSeq)
Query= CharProtDB::CH_024768 (616 letters) >FitnessBrowser__PV4:5207771 Length = 616 Score = 957 bits (2475), Expect = 0.0 Identities = 476/614 (77%), Positives = 534/614 (86%) Query: 1 MPKYRSATTTHGRNMAGARALWRATGMTDADFGKPIIAVVNSFTQFVPGHVHLRDLGKLV 60 M K RSAT+T GRNMAGARALWRATG+ D+DFGKPI+A+ NSFTQFVPGHVHL+D+G LV Sbjct: 1 MAKLRSATSTQGRNMAGARALWRATGVKDSDFGKPIVAIANSFTQFVPGHVHLKDMGSLV 60 Query: 61 AEQIEAAGGVAKEFNTIAVDDGIAMGHGGMLYSLPSRELIADSVEYMVNAHCADAMVCIS 120 A IE AGG+AKEFNTIAVDDGIAMGHGGMLYSLPSRELIADSVEYMVNAHCADA+VCIS Sbjct: 61 AGAIEEAGGIAKEFNTIAVDDGIAMGHGGMLYSLPSRELIADSVEYMVNAHCADALVCIS 120 Query: 121 NCDKITPGMLMASLRLNIPVIFVSGGPMEAGKTKLSDQIIKLDLVDAMIQGADPKVSDSQ 180 NCDKITPGMLMA+LRLNIPV+FVSGGPMEAGKTKLSD++IKLDLVDAM+ AD +VSD Sbjct: 121 NCDKITPGMLMAALRLNIPVVFVSGGPMEAGKTKLSDKLIKLDLVDAMVAAADDRVSDED 180 Query: 181 SDQVERSACPTCGSCSGMFTANSMNCLTEALGLSQPGNGSLLATHADRKQLFLNAGKRIV 240 S+++ERSACPTCGSCSGMFTANSMNCLTEALGLS PGNGSLLATH+DR++LFL AG+R++ Sbjct: 181 SEKIERSACPTCGSCSGMFTANSMNCLTEALGLSLPGNGSLLATHSDRRELFLEAGRRVM 240 Query: 241 ELTKRYYEQNDESALPRNIASKAAFENAMTLDIAMGGSTNTVLHLLAAAQEAEIDFTMSD 300 L RYY +DESALPRNIAS AFENAM LDIAMGGS+NTVLHLLAAAQEA++DFTM+D Sbjct: 241 ALANRYYRDDDESALPRNIASFKAFENAMALDIAMGGSSNTVLHLLAAAQEAKVDFTMAD 300 Query: 301 IDKLSRKVPQLCKVAPSTQKYHMEDVHRAGGVIGILGELDRAGLLNRDVKNVLGLTLPQT 360 ID+LSR+VP LCKVAPST KYHMEDVHRAGGV+GILGELDRAGLL+ DV +V G L Sbjct: 301 IDRLSRQVPHLCKVAPSTPKYHMEDVHRAGGVMGILGELDRAGLLHTDVSHVAGENLKAV 360 Query: 361 LEQYDVMLTQDDAVKNMFRAGPAGIRTTQAFSQDCRWDTLDDDRANGCIRSLEHAYSKDG 420 L QYD++ TQD+AV+ + AGPAGI TT+AFSQ CRW +LD DR GCIR+ E A+S++G Sbjct: 361 LVQYDLVQTQDEAVQQFYAAGPAGIPTTKAFSQSCRWPSLDVDRQEGCIRTREFAFSQEG 420 Query: 421 GLAVLYGNFAENGCIVKTAGVDDSILKFTGPAKVYESQDDAVEAILGGKVVAGDVVVIRY 480 GLAVL GN A +GCIVKTAGVD++ F G A+VYESQDDAV ILGG+VVAGDVVVIRY Sbjct: 421 GLAVLSGNIAADGCIVKTAGVDEANHTFVGHARVYESQDDAVAGILGGEVVAGDVVVIRY 480 Query: 481 EGPKGGPGMQEMLYPTSFLKSMGLGKACALITDGRFSGGTSGLSIGHVSPEAASGGSIGL 540 EGPKGGPGMQEMLYPTS+LKS GLG +CALITDGRFSGGTSGLSIGHVSPEAA+GG+I L Sbjct: 481 EGPKGGPGMQEMLYPTSYLKSKGLGTSCALITDGRFSGGTSGLSIGHVSPEAAAGGTIAL 540 Query: 541 IEDGDLIAIDIPNRGIQLQVSDAELAARREAQDARGDKAWTPKNRERQVSFALRAYASLA 600 +E GD I IDIP R I L VSD L RR+A ARG +AW P NRER VS AL+AYA LA Sbjct: 541 VETGDRIEIDIPARSITLAVSDEVLETRRQAMQARGKQAWKPVNRERSVSLALKAYAMLA 600 Query: 601 TSADKGAVRDKSKL 614 TSADKGAVRD SKL Sbjct: 601 TSADKGAVRDVSKL 614 Lambda K H 0.317 0.134 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 1246 Number of extensions: 39 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 616 Length of database: 616 Length adjustment: 37 Effective length of query: 579 Effective length of database: 579 Effective search space: 335241 Effective search space used: 335241 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 53 (25.0 bits)
Align candidate 5207771 Shew_0292 (dihydroxy-acid dehydratase (RefSeq))
to HMM TIGR00110 (ilvD: dihydroxy-acid dehydratase (EC 4.2.1.9))
../bin/blast/fastacmd -i /tmp/list.20608.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.20608.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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