GapMind for Amino acid biosynthesis

 

Alignments for a candidate for ilvI in Shewanella loihica PV-4

Align acetolactate synthase (subunit 1/2) (EC 2.2.1.6) (characterized)
to candidate 5209297 Shew_1775 acetolactate synthase 3 regulatory subunit (RefSeq)

Query= BRENDA::P00894
         (163 letters)



>FitnessBrowser__PV4:5209297
          Length = 164

 Score =  235 bits (599), Expect = 3e-67
 Identities = 114/163 (69%), Positives = 141/163 (86%)

Query: 1   MRRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQI 60
           MRRI+SVLLEN+ GALSRV+GLFSQRGYNIESLTVAPTDD TLSR+ I  V DE VLEQI
Sbjct: 1   MRRIISVLLENQPGALSRVVGLFSQRGYNIESLTVAPTDDVTLSRLNITLVADEAVLEQI 60

Query: 61  EKQLHKLVDVLRVSELGQGAHVEREIMLVKIQASGYGRDEVKRNTEIFRGQIIDVTPSLY 120
           EKQLHKL+D+L+VS + + +H+ERE+ L+K++A G GR+EVKR  +IFRGQI+DVT  LY
Sbjct: 61  EKQLHKLIDILKVSNITESSHIERELALIKVKAKGAGREEVKRTADIFRGQIVDVTSELY 120

Query: 121 TVQLAGTSGKLDAFLASIRDVAKIVEVARSGVVGLSRGDKIMR 163
           T+Q+AGTS KLDAF+A+I +V K++EV+RSGVVGL RG+K MR
Sbjct: 121 TIQMAGTSDKLDAFIAAIGEVTKVIEVSRSGVVGLCRGEKAMR 163


Lambda     K      H
   0.318    0.136    0.360 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 132
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 163
Length of database: 164
Length adjustment: 18
Effective length of query: 145
Effective length of database: 146
Effective search space:    21170
Effective search space used:    21170
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 43 (21.2 bits)

Align candidate 5209297 Shew_1775 (acetolactate synthase 3 regulatory subunit (RefSeq))
to HMM TIGR00119 (ilvN: acetolactate synthase, small subunit (EC 2.2.1.6))

Software error:

../bin/blast/fastacmd -i /tmp/list.20694.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.20694.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.