Align cysteine synthase (EC 2.5.1.47) (characterized)
to candidate CA265_RS10150 CA265_RS10150 cysteine synthase B
Query= BRENDA::P29848 (303 letters) >FitnessBrowser__Pedo557:CA265_RS10150 Length = 290 Score = 310 bits (795), Expect = 2e-89 Identities = 161/289 (55%), Positives = 204/289 (70%), Gaps = 9/289 (3%) Query: 8 IGNTPLVKLQRLGPDNGSEIWVKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGDVLIEA 67 IGNTP+ +LQ+L + ++ KLEGNNP GSVKDRA+L+MI A +RG++ PG L+EA Sbjct: 8 IGNTPMAELQKLNINPAVRVFAKLEGNNPGGSVKDRASLNMIRSAIERGDVVPGTKLVEA 67 Query: 68 TSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARDLAL 127 TSGNTGIALAMIA+L ++L+MP N ++ER+ M A+GA++ L+ + +E RD A Sbjct: 68 TSGNTGIALAMIASLYNLEIELVMPANSTRERKVTMEAFGAKVTLL---ESIEDCRDYA- 123 Query: 128 AMSERGEGK---LLDQFNNPDNPYAHYTTTGPEIWRQTSGRITHFVSSMGTTGTITGVSR 184 E+G K LL+QF NPDN AHY TTGPEIWR T G ITHFVSSMGTTGTI G SR Sbjct: 124 --EEKGVSKGYFLLNQFANPDNYLAHYKTTGPEIWRDTEGEITHFVSSMGTTGTIMGCSR 181 Query: 185 FLREQEKPVTIVGLQPEEGSSIPGIRRWPAEYMPGIFNASLVDEVLDIHQNDAENTMREL 244 F +E+ + I+G QP EGSSIPGIRRWP EY+P IF+ VD V+DI Q +A R + Sbjct: 182 FFKEKNNDIQIIGCQPTEGSSIPGIRRWPEEYLPKIFDPLRVDRVMDIAQEEATLMSRRM 241 Query: 245 AVREGIFCGVSSGGAVAGALRVARATPGAIVVAIICDRGDRYLSTGVFG 293 A EG+F G+SSGGA A AL++A +V I CDRGDRYLS+ +FG Sbjct: 242 AKEEGLFAGMSSGGACAAALKLASELDKGTIVFIACDRGDRYLSSDLFG 290 Lambda K H 0.316 0.134 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 307 Number of extensions: 14 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 303 Length of database: 290 Length adjustment: 26 Effective length of query: 277 Effective length of database: 264 Effective search space: 73128 Effective search space used: 73128 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 48 (23.1 bits)
Align candidate CA265_RS10150 CA265_RS10150 (cysteine synthase B)
to HMM TIGR01136 (cysteine synthase (EC 2.5.1.47))
../bin/blast/fastacmd -i /tmp/list.15335.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.15335.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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