Align 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; EC 5.3.1.16; Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (uncharacterized)
to candidate CA265_RS03615 CA265_RS03615 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase
Query= curated2:A6GY76 (241 letters) >FitnessBrowser__Pedo557:CA265_RS03615 Length = 249 Score = 175 bits (443), Expect = 9e-49 Identities = 88/244 (36%), Positives = 152/244 (62%), Gaps = 6/244 (2%) Query: 1 MRIIPAIDIIDGKCVRLSKGDYNTKIIYNENPLEVAKKFEAHGVQYLHLVDLDGAKSSQI 60 M IIPAIDI+DGK VRL +GDYN K Y + E+ +K+ ++G ++H++DL+GAK Sbjct: 1 MYIIPAIDILDGKVVRLREGDYNQKTEYAVSIPEMIEKYRSNGTDFIHIIDLNGAKGD-F 59 Query: 61 INYKILEKIASQTALKIDFGGGLKSDNDLRIAFESGANQITGGSIAVKNPEVFNEWIIKY 120 N K L +I +T +K+ +GGG+++ + ++G +++ G+ A+ NP+ + + Sbjct: 60 SNQKTLFEIIKKTEMKVQYGGGIRTIEQVTNLLDAGIHRVIVGTQAITNPDFLPQLSEAF 119 Query: 121 G-----ADKIILGADANNEKVAISGWLEESKEELIPFIQNYQNQGIEYVICTDIAKDGML 175 A++I++ D +E + SGW+E S +L+ ++ + G +CTDI+KDG L Sbjct: 120 AKKDDYANRIVIAIDVLDEVIKYSGWMESSPIKLMDYVDKCLSLGFFRFLCTDISKDGKL 179 Query: 176 AGPSFNLYAKILSETKGIKLIASGGISTFDELPKLAQLGCEGTIIGKAIYENRITLKQLE 235 G + +LY K+L + IKLIASGG+S+ ++ LA+ ++GKAIYE+RIT+++++ Sbjct: 180 GGAAIDLYEKLLEHSPMIKLIASGGVSSMQDIYDLAKYPIRSVVVGKAIYEDRITIEEIK 239 Query: 236 NFIL 239 + L Sbjct: 240 EWNL 243 Score = 26.9 bits (58), Expect = 4e-04 Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 2/89 (2%) Query: 153 IQNYQNQGIEYVICTDIAKDGMLAGPSFNLYAKILSETKGIKLIASGGISTFDELPKLAQ 212 I+ Y++ G +++ D+ L+ +I+ +T+ +K+ GGI T +++ L Sbjct: 36 IEKYRSNGTDFIHIIDLNGAKGDFSNQKTLF-EIIKKTE-MKVQYGGGIRTIEQVTNLLD 93 Query: 213 LGCEGTIIGKAIYENRITLKQLENFILNK 241 G I+G N L QL K Sbjct: 94 AGIHRVIVGTQAITNPDFLPQLSEAFAKK 122 Lambda K H 0.317 0.138 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 196 Number of extensions: 9 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 2 Number of HSP's successfully gapped: 2 Length of query: 241 Length of database: 249 Length adjustment: 24 Effective length of query: 217 Effective length of database: 225 Effective search space: 48825 Effective search space used: 48825 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 46 (22.3 bits)
Align candidate CA265_RS03615 CA265_RS03615 (1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase)
to HMM TIGR00007 (hisA: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase (EC 5.3.1.16))
../bin/blast/fastacmd -i /tmp/list.19462.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.19462.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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