Align putative bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase (EC 3.5.4.19; EC 3.6.1.31) (characterized)
to candidate CA265_RS03605 CA265_RS03605 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase
Query= ecocyc::HISTCYCLOPRATPPHOS (203 letters) >FitnessBrowser__Pedo557:CA265_RS03605 Length = 200 Score = 214 bits (545), Expect = 8e-61 Identities = 107/194 (55%), Positives = 138/194 (71%), Gaps = 1/194 (0%) Query: 10 LDWEKTDGLMPVIVQHAVSGEVLMLGYMNPEALDKTLESGKVTFFSRTKQRLWTKGETSG 69 LDW+KT GL+PVI+Q + EVLMLGYMN EAL+KT GKVTFFSR+K RLWTKGETS Sbjct: 8 LDWDKTAGLLPVIIQDYKTLEVLMLGYMNAEALEKTQAEGKVTFFSRSKNRLWTKGETSN 67 Query: 70 NFLNVVSIAPDCDNDTLLVLANPIGPTCHKGTSSCFGDTAHQWLFLYQLEQLLAERKSAD 129 NFL V + DCD+DT+L+ A+ +GPTCH G+ SCF T + F+++LE ++ +R Sbjct: 68 NFLYVKELFVDCDHDTILIKADAVGPTCHTGSRSCF-KTDYNQNFIFELENIINDRYENP 126 Query: 130 PETSYTAKLYASGTKRIAQKVGEEGVETALAATVHDRFELTNEASDLMYHLLVLLQDQGL 189 E SY K+ G +IAQKVGEEGVET +AA EL EASDL++HLL LL+++GL Sbjct: 127 VEGSYINKMRNKGLNKIAQKVGEEGVETVIAALAETEEELIGEASDLVFHLLFLLKEKGL 186 Query: 190 DLTTVIENLRKRHQ 203 + + +NL KRHQ Sbjct: 187 SIQDIAKNLEKRHQ 200 Lambda K H 0.317 0.132 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 140 Number of extensions: 4 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 203 Length of database: 200 Length adjustment: 21 Effective length of query: 182 Effective length of database: 179 Effective search space: 32578 Effective search space used: 32578 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 45 (21.9 bits)
Align candidate CA265_RS03605 CA265_RS03605 (bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase)
to HMM PF01502 (PRA-CH)
../bin/blast/fastacmd -i /tmp/list.8277.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.8277.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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