Align aspartate kinase (EC 2.7.2.4) (characterized)
to candidate CA265_RS09655 CA265_RS09655 aspartate kinase
Query= BRENDA::Q9S702 (559 letters) >FitnessBrowser__Pedo557:CA265_RS09655 Length = 437 Score = 233 bits (593), Expect = 1e-65 Identities = 170/470 (36%), Positives = 257/470 (54%), Gaps = 50/470 (10%) Query: 86 VMKFGGSSVASAERMIQVAKLILSFPDEKPVVVLSAMAKTTNKLL------MAGEK---A 136 ++KFGG+SV S ERM ++ +I P+E+ +VVLSA++ TTN L+ +AG+K + Sbjct: 3 ILKFGGTSVGSPERMTKLLDIIN--PNEEQIVVLSAVSGTTNSLVEIANYFLAGDKKKGS 60 Query: 137 VCCGVTNVDTIEELSYIKELHIRTAHELGVETAVIAEHLEGLEQLLKGVAMMKELTLRSR 196 C V N+ + ++ L E G E VI H L L + T Sbjct: 61 EC--VENLYQKYKTFVVELLPAAEFQEQGNE--VIDYHFGFLAGLANDI-----FTSIEE 111 Query: 197 DYLVSFGECMSTRLFAAYLNKIGHKARQYDAFEIGIITTDDFTNADILEATYPAVSKKL- 255 +++ GE +ST L+ YL IG + A + + TD+ DI P +K L Sbjct: 112 KVVLAQGELLSTTLYHIYLKSIGVPSVLLPALDF--MKTDEDNEPDI-----PFTTKHLT 164 Query: 256 -LGDWSKENALPVVTGFLGKGWRSCAVTTLGRGGSDLTATTIGKALGLREIQVWKDVDGV 314 L + K+N L + G++ + V L RGGSD TA+ +G A+ E+Q+W D+DG+ Sbjct: 165 PLLEQHKDNKLFITQGYICRNSFG-EVDNLRRGGSDYTASLLGAAILAEEVQIWTDIDGM 223 Query: 315 LTCDPNIYCGAQPVPHLTFDEAAELAYFGAQVLHPLSMRPAREGNIPVRVKNSYNPTAPG 374 DP I G +P+ L+FDEAAELAYFGA++LHP S+ PA++ IPVR+ N+ P+A G Sbjct: 224 HNNDPRIVKGTKPIAQLSFDEAAELAYFGAKILHPQSVFPAQKYKIPVRLLNTMEPSAAG 283 Query: 375 TVITRSRDMSKAVLTSIVLKRNVTMLDITSTRMLGQYGFLAKVFSTFEKLGISVDVVATS 434 T+IT D + + SI K +T + I S+RML YGFL +VF FE+ +D++ TS Sbjct: 284 TLIT--HDSERGKIKSIAAKDGITAIRIQSSRMLLAYGFLRRVFEVFERYKTPIDMITTS 341 Query: 435 EVSISLTLDPSKFCSRELIQHELDQVVEELEKIAVVNLLRHRSIISLIGNVQRSSFILEK 494 EV++SLT+D + L Q++EELE V + + SI+ ++G+ F EK Sbjct: 342 EVAVSLTIDETA---------HLPQIIEELESFGTVEVDTNHSIVCVVGD-----FGSEK 387 Query: 495 -GF--RVLR-TNGINVQMISQGASKVNISLIVNDDEAEHCVKALHSAFFE 540 GF RVL I ++MIS G S N+SL++ + +++LH+ FE Sbjct: 388 HGFASRVLEGLKHIPIRMISYGGSNYNVSLLILSEYKTEALRSLHNRLFE 437 Lambda K H 0.319 0.133 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 475 Number of extensions: 21 Number of successful extensions: 7 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 559 Length of database: 437 Length adjustment: 34 Effective length of query: 525 Effective length of database: 403 Effective search space: 211575 Effective search space used: 211575 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 52 (24.6 bits)
Align candidate CA265_RS09655 CA265_RS09655 (aspartate kinase)
to HMM TIGR00657 (aspartate kinase (EC 2.7.2.4))
../bin/blast/fastacmd -i /tmp/list.27432.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.27432.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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