Align methionine synthase (EC 2.1.1.13) (characterized)
to candidate CA265_RS23440 CA265_RS23440 methionine synthase
Query= BRENDA::P13009 (1227 letters) >FitnessBrowser__Pedo557:CA265_RS23440 Length = 1233 Score = 1476 bits (3822), Expect = 0.0 Identities = 741/1235 (60%), Positives = 927/1235 (75%), Gaps = 22/1235 (1%) Query: 8 LRAQLNERILVLDGGMGTMIQSYRLNEADFRGERFADWPCDLKGNNDLLVLSKPEVIAAI 67 +R +L +RILV+DG MGTMIQ Y L E DFRGERF + PCD+KGNNDLL +++P++I I Sbjct: 3 IREELEKRILVIDGAMGTMIQRYTLTEEDFRGERFKNHPCDVKGNNDLLNITRPDIIKTI 62 Query: 68 HNAYFEAGADIIETNTFNSTTIAMADYQMESLSAEINFAAAKLARACADEWTARTPEKPR 127 H Y +GADIIETNTF++ I+MADYQME LS E++F A++A+ +E+ A P++ Sbjct: 63 HLEYLASGADIIETNTFSTQRISMADYQMEDLSYEMSFEGARVAKEAVNEFMAANPDRKC 122 Query: 128 YVAGVLGPTNRTASISPDVNDPAFRNITFDGLVAAYRESTKALVEGGADLILIETVFDTL 187 +VAG +GPTNRT S+SP+VNDP FR + FD L AAY E + LV+GG+D++LIET+FDTL Sbjct: 123 FVAGAIGPTNRTLSMSPNVNDPGFRAVYFDELEAAYYEQVRGLVDGGSDVLLIETIFDTL 182 Query: 188 NAKAAVFAVKTEFEALGVELPIMISGTITDASGRTLSGQTTEAFYNSLRHAEALTFGLNC 247 NAK A+ A+K E +G +L IMISGTITDASGRTLSGQT EAF NS+ HA+ L+ G NC Sbjct: 183 NAKVAIVAIKKYEEVIGRKLEIMISGTITDASGRTLSGQTAEAFLNSVMHAKPLSIGFNC 242 Query: 248 ALGPDELRQYVQELSRIAECYVTAHPNAGLPNAFGEYDLDADTMAKQIREWAQAGFLNIV 307 ALG E+R +++EL+ A CYV+A+PNAGLPN FG YD A + ++ +GF+NIV Sbjct: 243 ALGAKEMRPHIEELAAKAGCYVSAYPNAGLPNEFGAYDEQPHETAHLVDDFIASGFVNIV 302 Query: 308 GGCCGTTPQHIAAMSRAVEGLAPRKLPEIPVACRLSGLEPLNIGEDSLFVNVGERTNVTG 367 GGCCGTTP+HI +++ PRK+P + RLSGLEP+ I +S+FVN+GERTN+TG Sbjct: 303 GGCCGTTPEHIGCIAKNARKAEPRKIPVLEPYMRLSGLEPVTITPESIFVNIGERTNITG 362 Query: 368 SAKFKRLIKEEKYSEALDVARQQVENGAQIIDINMDEGMLDAEAAMVRFLNLIAGEPDIA 427 S KF +LI Y AL VA QQVE GAQ+ID+NMDEGMLD+EAAM +FLNLIA EPDIA Sbjct: 363 SPKFSKLILGGDYEAALAVALQQVEGGAQVIDVNMDEGMLDSEAAMTKFLNLIASEPDIA 422 Query: 428 RVPIMIDSSKWDVIEKGLKCIQGKGIVNSISMKEGVDAFIHHAKLLRRYGAAVVVMAFDE 487 ++PIM+DSSKW VIE GLKC+QGKGIVNSIS+KEG D F A+ + +YGAAVVVMAFDE Sbjct: 423 KLPIMVDSSKWSVIENGLKCLQGKGIVNSISLKEGEDKFRESARKIMQYGAAVVVMAFDE 482 Query: 488 QGQADTRARKIEICRRAYKILTEEVGFPPEDIIFDPNIFAVATGIEEHNNYAQDFIGACE 547 QGQAD R+ EIC+R+Y IL E+GFP EDIIFDPNI VATG+EEHNNYA DFI A Sbjct: 483 QGQADNYERRKEICKRSYDILVNEIGFPAEDIIFDPNILTVATGLEEHNNYAVDFINATR 542 Query: 548 DIKRELPHALISGGVSNVSFSFRGNDPVREAIHAVFLYYAIRNGMDMGIVNAGQLAIYDD 607 IK LPHA +SGGVSN+SFSFRGN+ VREA+H+ FLY+AI+ G+DMGIVNAG L +Y + Sbjct: 543 WIKENLPHAKVSGGVSNISFSFRGNNTVREAMHSAFLYHAIQAGLDMGIVNAGMLEVYQE 602 Query: 608 LPAELRDAVEDVILNRRDDGTERLLELAEKYRGSKTDDTANAQQAEWRSWEVNKRLEYSL 667 +P EL + VEDV+LNRRDD TERL+E A+ K+ + EWR V +RL +SL Sbjct: 603 IPPELLERVEDVLLNRRDDATERLVEYADTV---KSKGKEVVKDEEWRKGSVEERLSHSL 659 Query: 668 VKGITEFIEQDTEEARQQATRPIEVIEGPLMDGMNVVGDLFGEGKMFLPQVVKSARVMKQ 727 VKGI E+++ D EEARQ+ RPI+VIEGPLMDGMN+VGDLFG GKMFLPQVVKSARVMK+ Sbjct: 660 VKGIVEYLDDDVEEARQKYARPIQVIEGPLMDGMNIVGDLFGAGKMFLPQVVKSARVMKK 719 Query: 728 AVAYLEPFIEASK------EQGKTNGKMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDLG 781 AVAYL PFIE K +Q + G++++ATVKGDVHDIGKNIVGVVL CNN+EIVD+G Sbjct: 720 AVAYLLPFIEQEKLDNPDQDQNSSAGRVLMATVKGDVHDIGKNIVGVVLACNNFEIVDMG 779 Query: 782 VMVPAEKILRTAKEVNADLIGLSGLITPSLDEMVNVAKEMERQGFTIPLLIGGATTSKAH 841 VMVPA++I++ AKE+NAD+IGLSGLITPSLDEMV+ AKEMER+GFTIPL+IGGATTS+ H Sbjct: 780 VMVPAQEIIKKAKEINADIIGLSGLITPSLDEMVHFAKEMEREGFTIPLIIGGATTSRIH 839 Query: 842 TAVKIEQNYSGPTVYVQNASRTVGVVAALLSDTQRDDFVARTRKEYETVRIQHGRKKPRT 901 AVK+ NYSGP ++V +ASR+V V + L++ +D++VA R EY+ R H K+ Sbjct: 840 AAVKVAPNYSGPAIHVLDASRSVTVCSTLMNPETKDEYVAGIRAEYDKAREAHLNKRSDK 899 Query: 902 PPVTLEAARDNDFAFDWQAYTPPVAHRLGVQEVE-ASIETLRNYIDWTPFFMTWSLAGKY 960 TLE AR+N F D+Q PV G + + +E L YIDWTPFF TW L G Y Sbjct: 900 RFKTLEEARENRFKIDFQP-NLPVPEFTGTRVFDNYPLEELVPYIDWTPFFHTWELRGSY 958 Query: 961 PRILEDEVVGVEAQRLFKDANDMLDKLSAEKTLNPRGVVGLFPANRVGDDIEIYRD---- 1016 P+I +D+ VG EA++LF DA +L ++ EK L R V+G +PAN VGDDI++ D Sbjct: 959 PKIFDDKNVGDEAKKLFDDAQTLLKRILDEKLLTARAVIGFWPANTVGDDIQLTVDSSQL 1018 Query: 1017 ------ETRTHVINVSHHLRQQTEKT-GFANYCLADFVAPKLSGKADYIGAFAVTGGLEE 1069 +T + H LRQQ EK G Y L+DF+APK SG DY G FAVT G+ Sbjct: 1019 SNDSKLKTENSQLVTIHTLRQQAEKVDGQPYYALSDFIAPKESGIQDYFGGFAVTAGIGI 1078 Query: 1070 DALADAFEAQHDDYNKIMVKALADRLAEAFAEYLHERVRKVYWGYAPNENLSNEELIREN 1129 D L + FE+ +DDYN IM KALADRLAEAFAE +HERVRK YWGYA +ENLSN+ELI+E Sbjct: 1079 DELVNEFESNYDDYNSIMAKALADRLAEAFAERMHERVRKEYWGYAQDENLSNQELIKEE 1138 Query: 1130 YQGIRPAPGYPACPEHTEKATIWELLEVEKHTGMKLTESFAMWPGASVSGWYFSHPDSKY 1189 Y GIRPAPGYPACPEHTEK T+++LL+ E G+ LTES+AM+P A+VSG+YF+HPDS+Y Sbjct: 1139 YAGIRPAPGYPACPEHTEKGTLFQLLDAENKIGLHLTESYAMYPTAAVSGFYFAHPDSRY 1198 Query: 1190 YAVAQIQRDQVEDYARRKGMSVTEVERWLAPNLGY 1224 + + +I +DQ+EDYA RK M V EVERWL+PNL Y Sbjct: 1199 FGLGKITKDQIEDYAIRKNMPVEEVERWLSPNLAY 1233 Lambda K H 0.318 0.134 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 3661 Number of extensions: 153 Number of successful extensions: 5 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 1227 Length of database: 1233 Length adjustment: 47 Effective length of query: 1180 Effective length of database: 1186 Effective search space: 1399480 Effective search space used: 1399480 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 59 (27.3 bits)
Align candidate CA265_RS23440 CA265_RS23440 (methionine synthase)
to HMM TIGR02082 (metH: methionine synthase (EC 2.1.1.13))
../bin/blast/fastacmd -i /tmp/list.17694.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.17694.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.