Align Aspartate-semialdehyde dehydrogenase 2; ASA dehydrogenase 2; ASADH 2; Aspartate-beta-semialdehyde dehydrogenase 2; EC 1.2.1.11 (characterized)
to candidate CA265_RS15395 CA265_RS15395 aspartate-semialdehyde dehydrogenase
Query= SwissProt::P23247 (337 letters) >FitnessBrowser__Pedo557:CA265_RS15395 Length = 329 Score = 280 bits (716), Expect = 4e-80 Identities = 161/331 (48%), Positives = 215/331 (64%), Gaps = 11/331 (3%) Query: 7 VAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYRFNGKTVRVQNVEEFDWSQ 66 VA+ GATG VG ML+VL+ER FP+ EL +ASE+S GK F GK + +++ + Sbjct: 3 VAVVGATGLVGTVMLKVLEERNFPLTELIPVASEKSVGKEITFKGKKFPIVSMDTAISMK 62 Query: 67 VHIALFSAGGELSAKWAPIAAEAGVVVIDNTSHFRYDYDIPLVVPEVNPEAIAEFRNRNI 126 IALFSAGG S + AP EAG VIDN+S +R D I L+VPEVN ++ + I Sbjct: 63 PDIALFSAGGNTSLEHAPRFKEAGTTVIDNSSAWRMDPAIKLIVPEVNAHELS--IDNKI 120 Query: 127 IANPNCSTIQMLVALKPIYDAVGIERINVTTYQSVSGAGKAGIDELAGQTAKLLNGYPAE 186 IANPNCSTIQM+V LKP++D I+R+ V+TYQSV+G G +++L + K ++G A Sbjct: 121 IANPNCSTIQMVVVLKPLHDKYKIKRVVVSTYQSVTGTGVKAVEQLMNE-RKGVDGPKA- 178 Query: 187 TNTFSQQIAFNCIPQIDQFMDNGYTKEEMKMVWETQKIFNDPSIMVNPTCVRVPVFYGHA 246 + +I N +P ID FM+NGYTKEEMKMV ET KI +D SI V T VR+PV GH+ Sbjct: 179 ---YPYEIDLNVLPHIDVFMENGYTKEEMKMVKETNKIMSDDSIKVTATTVRIPVMGGHS 235 Query: 247 EAVHVETRAPIDAEQVMDMLEQTDGI---ELFRGADFPTQVRDAGGKDHVLVGRVRNDIS 303 E+V++E D +V +LE++ GI + +P +DA KD V VGR+R D S Sbjct: 236 ESVNIEFENDFDLAEVRSILEKSPGIIVVDDVANLKYP-MPKDAHEKDEVFVGRIRRDES 294 Query: 304 HHSGINLWVVADNVRKGAATNAVQIAELLVR 334 +NLW+VADN+RKGAATNAVQIAE L++ Sbjct: 295 APKALNLWIVADNLRKGAATNAVQIAEYLIQ 325 Lambda K H 0.319 0.135 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 278 Number of extensions: 12 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 337 Length of database: 329 Length adjustment: 28 Effective length of query: 309 Effective length of database: 301 Effective search space: 93009 Effective search space used: 93009 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 49 (23.5 bits)
Align candidate CA265_RS15395 CA265_RS15395 (aspartate-semialdehyde dehydrogenase)
to HMM TIGR01296 (asd: aspartate-semialdehyde dehydrogenase (EC 1.2.1.11))
../bin/blast/fastacmd -i /tmp/list.4949.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.4949.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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