Align aspartate kinase (EC 2.7.2.4) (characterized)
to candidate CA265_RS06275 CA265_RS06275 aspartate kinase
Query= BRENDA::Q57991 (473 letters) >FitnessBrowser__Pedo557:CA265_RS06275 Length = 422 Score = 184 bits (466), Expect = 6e-51 Identities = 132/421 (31%), Positives = 214/421 (50%), Gaps = 40/421 (9%) Query: 4 VMKFGGTSVGSGERIRHVAKIVTKRKKEDDDVVVVVSAMSEVTNALVEISQQALDVRDIA 63 + KFGG SV + +++VA IV KK ++++V+SAM +VT+ L +++Q L + A Sbjct: 3 IFKFGGASVKDADGVKNVANIVRDYKK--GNLLIVISAMGKVTDKLEKLTQAFLSQNNEA 60 Query: 64 KVGDFIKFIREKHYKAIEEAIKSEEIKEEVKKIIDSRIEELEKVLIGVAYLGELTPKSR- 122 I+ H+ I+E + + + +++ + + +L E P + Sbjct: 61 HA--IFDEIKHFHFNIIDELFQGKA---------NPVYDDVANTFVEIDWLIEDEPDNNE 109 Query: 123 ----DYILSFGERLSSPILSGAIRDLGEKSIALEGGEAGIITDNNFGSARVKRLE----V 174 D I+S GE +S+ I++ + + G K++ + I TDN++ +V + + Sbjct: 110 DYIYDQIVSIGEVVSTKIVAAWLNETGNKTLWADARNY-IQTDNSYREGKVDWAKTNQMI 168 Query: 175 KERLLPLLKEGIIPVVTGFIGTTEEGYITTLGRGGSDYSAALIGYGLDADIIEIWTDVSG 234 + LLPLL + II V GFIG T E Y TTLGR GSDYSAA+ L+A + IW DV G Sbjct: 169 QRDLLPLLNDNII-VTQGFIGGTSENYTTTLGREGSDYSAAIFASCLNAAALTIWKDVPG 227 Query: 235 VYTTDPRLVPTARRIPKLSYIEAMELAYFGAKVLHPRTIEPAMEKGIPILVKNTFEPESE 294 V DP+ +I +LSY +A+EL Y+GA V+HP+TI+P KGIP+ V++ +PE Sbjct: 228 VLNADPKWFDETEKIAQLSYHDAIELTYYGATVIHPKTIKPLQNKGIPLFVRSFIQPEGS 287 Query: 295 GTLIT---NDMEMSDSIVKAISTIKNVALINIFGAG-MVGVSGTAARIFKALGEEEVNVI 350 GT IT N + + I K N ALI+IF + + IF+ ++ + Sbjct: 288 GTAITKENNPLPIPSFIFKV-----NQALISIFPKDYSFIIEENLSNIFELFHTHKIKIN 342 Query: 351 LISQGSSETNISLVVSEEDVDKALKALKREFGDFGKKS-------FLNNNLIRDVSVDKD 403 + + ++S+ ++K +K L EF K + N I V+VDKD Sbjct: 343 TMLNSAISFSVSVDDHPTQIEKLIKDLSEEFTVKYNKGLELVTIRYYNQQTIDRVTVDKD 402 Query: 404 V 404 + Sbjct: 403 I 403 Lambda K H 0.316 0.135 0.364 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 443 Number of extensions: 24 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 473 Length of database: 422 Length adjustment: 33 Effective length of query: 440 Effective length of database: 389 Effective search space: 171160 Effective search space used: 171160 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 51 (24.3 bits)
Align candidate CA265_RS06275 CA265_RS06275 (aspartate kinase)
to HMM TIGR00657 (aspartate kinase (EC 2.7.2.4))
../bin/blast/fastacmd -i /tmp/list.19817.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.19817.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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