GapMind for Amino acid biosynthesis

 

Alignments for a candidate for ilvI in Pedobacter sp. GW460-11-11-14-LB5

Align Acetolactate synthase small subunit; EC 2.2.1.6; Acetohydroxy-acid synthase small subunit; AHAS; ALS (uncharacterized)
to candidate CA265_RS15810 CA265_RS15810 acetolactate synthase small subunit

Query= curated2:P37252
         (172 letters)



>FitnessBrowser__Pedo557:CA265_RS15810
          Length = 212

 Score =  101 bits (251), Expect = 9e-27
 Identities = 58/154 (37%), Positives = 89/154 (57%), Gaps = 2/154 (1%)

Query: 5   ITLTVVNRSGVLNRITGLFTKRHYNIESITVGHTETAGVSRITFVVHVEGENDVEQLTKQ 64
           IT+   NR G+LNRI  +F+KR  NIES+    +E  G+ R   V+H EG   V +L +Q
Sbjct: 24  ITVYAENRIGLLNRIAIIFSKRKINIESLNTSPSEIDGIHRFNIVIH-EGYEVVRKLARQ 82

Query: 65  LNKQIDVLKVTDITNQSIVQRELALIKV-VSAPSTRTEINGIIEPFRASVVDVSRDSIVV 123
           + KQI+VLKV   TN+ I+ +ELAL KV     + +  +  ++  + AS V + +D  V 
Sbjct: 83  IEKQIEVLKVYFNTNEEIIWQELALYKVSTDEIAEKVTVERLLRQYGASAVVIRKDYTVF 142

Query: 124 QVTGESNKIEALIELLKPYGIKEIARTGTTAFAR 157
            VTG   + +AL++ L+PY + E  R+   A  +
Sbjct: 143 AVTGHREETDALVKALEPYELIEFVRSARVAIIK 176


Lambda     K      H
   0.315    0.131    0.340 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 78
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 172
Length of database: 212
Length adjustment: 20
Effective length of query: 152
Effective length of database: 192
Effective search space:    29184
Effective search space used:    29184
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 44 (21.6 bits)

Align candidate CA265_RS15810 CA265_RS15810 (acetolactate synthase small subunit)
to HMM TIGR00119 (ilvN: acetolactate synthase, small subunit (EC 2.2.1.6))

Software error:

../bin/blast/fastacmd -i /tmp/list.12247.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.12247.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.