Align Argininosuccinate synthase; Citrulline--aspartate ligase; EC 6.3.4.5 (characterized)
to candidate GFF3439 PGA1_c34920 argininosuccinate synthase ArgG
Query= SwissProt::P59846 (400 letters) >FitnessBrowser__Phaeo:GFF3439 Length = 408 Score = 491 bits (1263), Expect = e-143 Identities = 246/399 (61%), Positives = 300/399 (75%), Gaps = 5/399 (1%) Query: 2 KIVLAYSGGLDTSIILKWLKETYRAEVIAFTADIGQGEEVEEAREKALRTGAS--KAIAL 59 K+VLAYSGGLDTSIILKWL+ Y EV+ FTAD+GQGEE+E AR+KA G Sbjct: 6 KVVLAYSGGLDTSIILKWLQTEYGCEVVTFTADLGQGEELEPARQKAELLGIKPENIFIE 65 Query: 60 DLKEEFVRDFVFPMMRAGAVYEGYYLLGTSIARPLIAKHLVRIAEEEGAEAIAHGATGKG 119 D++EEFVRDFVFPM RA AVYEG YLLGTSIARPLI+K LV IAE GA+A+AHGATGKG Sbjct: 66 DVREEFVRDFVFPMFRANAVYEGLYLLGTSIARPLISKRLVEIAEATGADAVAHGATGKG 125 Query: 120 NDQVRFELTAYALKPDIKVIAPWREWSFQGRKEMIAYAEAHGIPVPVTQ--EKPYSMDAN 177 NDQVRFEL AYAL PDIKVIAPWREW R ++ +AEAH IPV + E P+S+DAN Sbjct: 126 NDQVRFELAAYALNPDIKVIAPWREWDLTSRTRLLEFAEAHQIPVAKDKRGEAPFSVDAN 185 Query: 178 LLHISYEGGVLEDPWAEPPKGMFRMTQDPEEAPDAPEYVEVEFFEGDPVAVNGERLSPAA 237 LLH S EG VLEDP P +++ T PE+AP+ E++E+ F +GD V++NGE +SPA Sbjct: 186 LLHTSSEGKVLEDPAVAAPDYVYQRTVHPEDAPNEAEFIEIGFEKGDAVSINGEAMSPAT 245 Query: 238 LLQRLNEIGGRHGVGRVDIVENRFVGMKSRGVYETPGGTILYHARRAVESLTLDREVLHQ 297 +L +LNE GG+HG+GR+D+VE RFVGMKSRG+YETPGGTIL A R +ES+T+DR +H Sbjct: 246 ILTQLNEYGGKHGIGRLDLVEGRFVGMKSRGIYETPGGTILLEAHRGIESITMDRGAMHL 305 Query: 298 RDMLSPKYAELVYYGFWYAPEREALQAYFDHVARSVTGVARLKLYKGNVYVVGRKAPKSL 357 +D L P+YAEL+Y GFWY+PERE LQA D VTG R+KLYKG+ VGR + SL Sbjct: 306 KDQLMPQYAELIYNGFWYSPEREMLQAAIDRSQEHVTGTVRVKLYKGSATTVGRWSDHSL 365 Query: 358 YRQDLVSF-DEAGGYDQKDAEGFIKIQALRLRVRALVER 395 Y + V+F D+AG YDQKDA GFI++ ALRL++ A ER Sbjct: 366 YSEAHVTFEDDAGAYDQKDAAGFIQLNALRLKLLAARER 404 Lambda K H 0.319 0.137 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 514 Number of extensions: 18 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 400 Length of database: 408 Length adjustment: 31 Effective length of query: 369 Effective length of database: 377 Effective search space: 139113 Effective search space used: 139113 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 50 (23.9 bits)
Align candidate GFF3439 PGA1_c34920 (argininosuccinate synthase ArgG)
to HMM TIGR00032 (argG: argininosuccinate synthase (EC 6.3.4.5))
../bin/blast/fastacmd -i /tmp/list.22863.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.22863.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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