Align Carbamoyl-phosphate synthase small chain, chloroplastic; Carbamoyl-phosphate synthetase glutamine chain; Protein VENOSA 6; EC 6.3.5.5 (characterized)
to candidate GFF653 PGA1_c06670 carbamoyl-phosphate synthase small chain
Query= SwissProt::Q9LVW7 (430 letters) >FitnessBrowser__Phaeo:GFF653 Length = 387 Score = 343 bits (880), Expect = 5e-99 Identities = 177/378 (46%), Positives = 241/378 (63%), Gaps = 7/378 (1%) Query: 58 ARLVLEDGSIWPAKSFGAPGTRIAELVFNTSLTGYQEILTDPSYAGQFVLMTNPQIGNTG 117 A L L DG+I+ FGA G +AEL FNT++TGYQEI+TDPSYAGQ V T P IGNTG Sbjct: 11 ACLALADGTIFYGNGFGAYGETVAELCFNTAMTGYQEIMTDPSYAGQIVTFTFPHIGNTG 70 Query: 118 VNPDDEESGQCFLTGLVIRNLSISTSNWRCTKTLADYLTERDIMGVYDLDTRAITRRLRE 177 V P+D+E+ G+V++ SNWR T+ L D+LT + + + +DTR +TR +R+ Sbjct: 71 VTPEDDETADPVAAGMVVKWDPTLASNWRATEELKDWLTRTNRIAIGGIDTRRLTRAIRQ 130 Query: 178 DGSLIGVLSTEQSKTDD--ELLQMSRSWD-IVGIDLISDVSCKSPYEWVDKTNAEWDFNT 234 G+ L+ + D L+ +R W + G+DL DV+C Y W D+ W Sbjct: 131 LGAPHVALAHDPDGNFDIEALVAKAREWSGLEGLDLAKDVTCSQSYRW-DEMRWAWPEGY 189 Query: 235 NSRDGKSYKVIAYDFGIKQNILRRLSSYGCQITVVPSTFPAAEALKMNPDGILFSNGPGD 294 ++ +KV+A D+G K+NILR L+S GC +TV+P++ A E L +PDG+ SNGPGD Sbjct: 190 TRQEAPKHKVVAIDYGAKRNILRCLASAGCDVTVLPASATAEEVLAHSPDGVFLSNGPGD 249 Query: 295 PSAV-PYAVETVKELLGK--VPVYGICMGHQLLGQALGGKTFKMKFGHHGGNHPVRNNRT 351 P+A YAV ++++L +P++GIC+GHQ+L ALGGKT KM GHHG NHPV+ N T Sbjct: 250 PAATGEYAVPMIQQILDTTDLPMFGICLGHQMLALALGGKTVKMNHGHHGANHPVKENAT 309 Query: 352 GQVEISAQNHNYAVDPASLPGGVEVTHVNLNDGSCAGLSFPEMNVMSLQYHPEASPGPHD 411 G+VEI++ NH +AVD SLP GVE THV+L DGS G+ + V S+Q+HPEASPGP D Sbjct: 310 GKVEITSMNHGFAVDGQSLPDGVEETHVSLFDGSNCGIRISDRPVYSVQHHPEASPGPQD 369 Query: 412 SDNAFREFIELMKRSKQS 429 S F F E M K + Sbjct: 370 SFYLFERFAEAMAARKSA 387 Lambda K H 0.316 0.134 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 532 Number of extensions: 23 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 430 Length of database: 387 Length adjustment: 31 Effective length of query: 399 Effective length of database: 356 Effective search space: 142044 Effective search space used: 142044 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 50 (23.9 bits)
Align candidate GFF653 PGA1_c06670 (carbamoyl-phosphate synthase small chain)
to HMM TIGR01368 (carA: carbamoyl-phosphate synthase, small subunit (EC 6.3.5.5))
../bin/blast/fastacmd -i /tmp/list.18684.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.18684.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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