Align carbamoyl-phosphate synthase (glutamine-hydrolysing) (EC 6.3.5.5) (characterized)
to candidate GFF2425 PGA1_c24560 carbamoyl-phosphate synthase large chain
Query= BRENDA::P00968 (1073 letters) >FitnessBrowser__Phaeo:GFF2425 Length = 1119 Score = 1251 bits (3238), Expect = 0.0 Identities = 673/1111 (60%), Positives = 805/1111 (72%), Gaps = 56/1111 (5%) Query: 1 MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPEM 60 MPKRTDI+SI+I+GAGPI+IGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDP + Sbjct: 1 MPKRTDIQSIMIIGAGPIIIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPGL 60 Query: 61 ADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATA 120 ADATYIEPI EVV KIIEKERPDA+LPTMGGQT LN AL LE GVL +F V MIGA Sbjct: 61 ADATYIEPITPEVVAKIIEKERPDALLPTMGGQTGLNTALALEEMGVLAKFDVEMIGAKR 120 Query: 121 DAIDKAEDRRRFDVAMKKIGLETARSGIAHT-------------MEEALAVAADVGFPCI 167 +AI+ AEDR+ F AM ++GLE R+ I ++ AL D+G P I Sbjct: 121 EAIEMAEDRKLFREAMDRLGLENPRATIITAPKKDNGNADLDAGVQMALDELEDIGLPAI 180 Query: 168 IRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDN 227 IRP+FT+GG+GGG+AYNRE++ C G+D SP ++L+DESL+GWKEYEMEVVRD DN Sbjct: 181 IRPAFTLGGTGGGVAYNREDYIHFCRSGMDASPVNQILVDESLLGWKEYEMEVVRDTADN 240 Query: 228 CIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFA 287 IIVCSIEN D MG+HTGDSITVAPA TLTDKEYQ+MR+AS+AVLREIGVETGGSNVQ+A Sbjct: 241 AIIVCSIENIDPMGVHTGDSITVAPALTLTDKEYQMMRSASIAVLREIGVETGGSNVQWA 300 Query: 288 VNPKNGRLIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELMNDITGGRTPAS 347 VNP +GR++VIEMNPRVSRSSALASKATGFPIAK+AAKLAVG+TLDEL NDIT G TPAS Sbjct: 301 VNPADGRMVVIEMNPRVSRSSALASKATGFPIAKIAAKLAVGFTLDELDNDIT-GVTPAS 359 Query: 348 FEPSIDYVVTKIPRFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQESLQKALRGLEVGAT 407 FEP+IDYVVTKIPRF FEKFAG+ LTT MKSVGE MAIGRT ESLQKAL +E G T Sbjct: 360 FEPTIDYVVTKIPRFAFEKFAGSEPYLTTAMKSVGETMAIGRTIHESLQKALASMETGLT 419 Query: 408 GFDPKV---SLDDPEALTKIRRELKDAGADRIWYIADAFRAGLSVDGVFNLTNIDRWFLV 464 GFD + D+ + + + + DR+ IA A R GLS D + +T D WFL Sbjct: 420 GFDEVAIPGAEDETDGKAAVIKAISQQTPDRMRTIAQAMRHGLSDDDIHAVTKFDPWFLA 479 Query: 465 QIEELVRLEEKVAEVGITGLNADFLRQLKRKGFADARLAKLAGVREAEIRKLRDQYDLHP 524 +I E+V E K+ G+ + LR +K GF DARLA L RE +IR R ++ Sbjct: 480 RIREIVEAEAKIRAEGLP-QDEHGLRAIKMLGFTDARLAMLTDQREGDIRAARRALGVNA 538 Query: 525 VYKRVDTCAAEFATDTAYMYSTYEE------ECEANPSTDREKIMVLGGGPNRIGQGIEF 578 V+KR+DTCAAEF T YMYSTYE ECEA PS D++K+++LGGGPNRIGQGIEF Sbjct: 539 VFKRIDTCAAEFEAQTPYMYSTYEAPAFGDVECEARPS-DKKKVVILGGGPNRIGQGIEF 597 Query: 579 DYCCVHASLALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPK-- 636 DYCC HA AL + GYETIM+NCNPETVSTDYDTSDRLYFEP+T E V+EI+ E Sbjct: 598 DYCCCHACFALTDAGYETIMINCNPETVSTDYDTSDRLYFEPLTFEHVMEILTKELENGT 657 Query: 637 --GVIVQYGGQTPLKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANAT 694 GVIVQ+GGQTPLKLA ALE G+P++GTSPDAID AEDRERFQ V +L LKQP N Sbjct: 658 LHGVIVQFGGQTPLKLANALEEEGIPILGTSPDAIDLAEDRERFQALVNQLGLKQPHNGI 717 Query: 695 VTAIEMAVEKAKEIGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDH 754 + A+E A+EIG+PLV+RPSYVLGGRAMEIV D L+RY AV VS D+PVLLD Sbjct: 718 ASTDAQALEIAEEIGFPLVIRPSYVLGGRAMEIVRDMDQLKRYIAEAVVVSGDSPVLLDS 777 Query: 755 FLDDAVEVDVDAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQ 814 +L AVE+DVDAICDG V + GIM+HIE+AGVHSGDSACSLP Y+LS+E+ ++ Q Sbjct: 778 YLSGAVELDVDAICDGTEVHVAGIMQHIEEAGVHSGDSACSLPPYSLSKEVIAEVKTQTN 837 Query: 815 KLAFELQVRGLMNVQFAVK-----NNEVYLIEVNPRAARTVPFVSKATGVPLAKVAARVM 869 LA L V GLMN+QFAVK + +YLIEVNPRA+RTVPFV+K+T +A +AARVM Sbjct: 838 ALAKALNVVGLMNIQFAVKPDADGKDVIYLIEVNPRASRTVPFVAKSTDSAIASIAARVM 897 Query: 870 AGKSL---------------------AEQGVTKEVIPPYYSVKEVVLPFNKFPGVDPLLG 908 AG+ L A+ + P++SVKE VLPF +FPGVD LLG Sbjct: 898 AGEPLSNFPKRAPYEPDAGYDVNVPMADPMTLADPDMPWFSVKEAVLPFARFPGVDTLLG 957 Query: 909 PEMRSTGEVMGVGRTFAEAFAKAQLGSNSTMKKHGRALLSVREGDKERVVDLAAKLL-KQ 967 PEMRSTGEVMG R+FA AF KAQ+G+ + GRA +S+++ DK ++ AAK+L +Q Sbjct: 958 PEMRSTGEVMGWDRSFARAFLKAQMGAGMVLPSEGRAFISIKDADKGTLMLDAAKILVEQ 1017 Query: 968 GFELDATHGTAIVLGEAGINPRLVNKVHEGRPHIQDRIKNGEYTYIINTTSGRRAIEDSR 1027 GF L AT GT L G+ LVNKV+EGRPH+ D +K+G ++NTT G +A++DS+ Sbjct: 1018 GFTLVATRGTQSWLDGHGVPCELVNKVYEGRPHVVDMLKDGNVQLLMNTTEGAQAVQDSK 1077 Query: 1028 VIRRSALQYKVHYDTTLNGGFATAMALNADA 1058 +R AL K+ Y TT G A A A+ A A Sbjct: 1078 DMRSVALYDKIPYFTTAAGANAAARAIKAQA 1108 Lambda K H 0.318 0.135 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 3105 Number of extensions: 157 Number of successful extensions: 23 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 1073 Length of database: 1119 Length adjustment: 46 Effective length of query: 1027 Effective length of database: 1073 Effective search space: 1101971 Effective search space used: 1101971 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 58 (26.9 bits)
Align candidate GFF2425 PGA1_c24560 (carbamoyl-phosphate synthase large chain)
to HMM TIGR01369 (carB: carbamoyl-phosphate synthase, large subunit (EC 6.3.5.5))
../bin/blast/fastacmd -i /tmp/list.15649.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.15649.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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