Align acetohydroxyacid synthase subunit B (EC 2.2.1.6) (characterized)
to candidate GFF1987 PGA1_c20210 acetolactate synthase isozyme 3 large subunit
Query= metacyc::MONOMER-18810 (585 letters) >FitnessBrowser__Phaeo:GFF1987 Length = 583 Score = 598 bits (1543), Expect = e-175 Identities = 310/570 (54%), Positives = 397/570 (69%), Gaps = 6/570 (1%) Query: 18 EMIGAEILVHALAEEGVEYVWGYPGGAVLYIYDELHKQTKFEHILVRHEQAAVHAADGYA 77 EM GA+++V AL ++GV+ V+GYPGGAVL IYDE+ Q HILVRHEQ AVHAA+GYA Sbjct: 4 EMTGAKMVVQALKDQGVDTVFGYPGGAVLPIYDEIFLQNDIRHILVRHEQGAVHAAEGYA 63 Query: 78 RATGKVGVALVTSGPGVTNAVTGIATAYLDSIPMVVITGNVPTHAIGQDAFQECDTVGIT 137 R+TGK GV LVTSGPG TNAVTG+ A LDSIP+VV+TG VPT IG DAFQE DTVGIT Sbjct: 64 RSTGKPGVVLVTSGPGATNAVTGLTDALLDSIPLVVLTGQVPTFMIGSDAFQEADTVGIT 123 Query: 138 RPIVKHNFLVKDVRDLAATIKKAFFIAATGRPGPVVVDIPKDVSRNACKYEYPKSIDMRS 197 RP KHN+LVKD LA T+ +AF +A GRPGPV++DIPKDV Y+ PK Sbjct: 124 RPCTKHNWLVKDTEKLAGTLHEAFHVATAGRPGPVLIDIPKDVQFATGTYQDPKPA-ASH 182 Query: 198 YNPVNKGHSGQIRKAVALLQGAERPYIYTGGGVVLA--NASDELRQLAALTGHPVTNTLM 255 Y P KG I + VA ++ A+RP YTGGGV+ + AS LR+L A TG PVT+TLM Sbjct: 183 YQPPVKGDLEAITELVAAMETAKRPVFYTGGGVINSGPGASQLLRELVAATGIPVTSTLM 242 Query: 256 GLGAFPGTSKQFVGMLGMHGTYEANMAMQNCDVLIAIGARFDDRVIGNPAHFTSQARKII 315 GLGA+P + K ++GMLGMHG YEANMAM +CD++I IGARFDDR+ G F+ + K Sbjct: 243 GLGAYPASGKNWLGMLGMHGLYEANMAMHDCDLMINIGARFDDRITGRLDAFSPNSTK-A 301 Query: 316 HIDIDPSSISKRVKVDIPIVGNVKDVLQELIAQIKASDIKPKREALAKWWEQIEQWRSVD 375 HIDIDPSSI+K ++VDIPIVG++ VL++++ K+ K A+AKW EQI +WR + Sbjct: 302 HIDIDPSSINKVIRVDIPIVGDIGHVLEDVLKVWKSRGRKVDSAAIAKWQEQITEWRDIR 361 Query: 376 CLKYDRSSEIIKPQYVVEKIWELTKG-DAFICSDVGQHQMWAAQFYKFDEPRRWINSGGL 434 CL Y S IKPQY +E++ LTK + +I ++VGQHQMWAAQ+ F++P RW+ SGGL Sbjct: 362 CLAYTASESTIKPQYALERLEALTKDRNRYITTEVGQHQMWAAQYLGFEDPNRWMTSGGL 421 Query: 435 GTMGVGLPYAMGIKKAFPEKEVVTITGEGSIQMCIQELSTCLQYDTPVKICSLNNGYLGM 494 GTMG G P ++G++ A P+ V+ + GE S M +QE+ T +QY PVK LNN LGM Sbjct: 422 GTMGYGTPASLGVQVAHPDALVINVAGEASWLMNMQEMGTAVQYRLPVKQFILNNERLGM 481 Query: 495 VRQWQEIEYDNRYSHSYMDALPDFVKLAEAYGHVGMRVEKTSDVEPALREAFRLKDRTVF 554 VRQWQE+ + RYSHS+ +ALPDFVKLAEA+G G+ + D++ A+ E D V Sbjct: 482 VRQWQELLHGERYSHSWSEALPDFVKLAEAFGAKGIICKDPKDLDDAIMEMLDY-DGPVI 540 Query: 555 LDFQTDPTENVWPMVQAGKGISEMLLGAED 584 D + EN +PM+ +GK +EMLLG D Sbjct: 541 FDCLVEKHENCFPMIPSGKAHNEMLLGEAD 570 Lambda K H 0.319 0.135 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 987 Number of extensions: 40 Number of successful extensions: 6 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 585 Length of database: 583 Length adjustment: 36 Effective length of query: 549 Effective length of database: 547 Effective search space: 300303 Effective search space used: 300303 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 53 (25.0 bits)
Align candidate GFF1987 PGA1_c20210 (acetolactate synthase isozyme 3 large subunit)
to HMM TIGR00118 (ilvB: acetolactate synthase, large subunit, biosynthetic type (EC 2.2.1.6))
../bin/blast/fastacmd -i /tmp/list.25849.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.25849.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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