Align 3-isopropylmalate dehydratase subunit LeuD (EC 4.2.1.33) (characterized)
to candidate GFF2932 PGA1_c29790 3-isopropylmalate dehydratase small subunit
Query= ecocyc::LEUD-MONOMER (201 letters) >FitnessBrowser__Phaeo:GFF2932 Length = 201 Score = 196 bits (498), Expect = 2e-55 Identities = 93/194 (47%), Positives = 131/194 (67%), Gaps = 3/194 (1%) Query: 3 EKFIKHTGLVVPLDAANVDTDAIIPKQFLQKVTRTGFGAHLFNDWRFLDEKGQQPNPDFV 62 EKF K G+ P+ N+DTD IIPK FL+ + RTGFG +LF++ R+ + DFV Sbjct: 2 EKFTKIQGIAAPMPLVNIDTDMIIPKVFLKSIQRTGFGKNLFDEMRY--NRDGSEIADFV 59 Query: 63 LNFPQYQGASILLARENFGCGSSREHAPWALTDYGFKVVIAPSFADIFYGNSFNNQLLPV 122 LN PQY+ A IL+A +NFGCGSSREHAPWA+ D+G + +++ SFADIF+ NSF N +LP+ Sbjct: 60 LNKPQYRDAEILIAGDNFGCGSSREHAPWAIADFGIRCIVSTSFADIFFNNSFKNGILPI 119 Query: 123 KLSDAEVDELFALVKANPGIHFDVDLEAQEVKAGE-KTYRFTIDAFRRHCMMNGLDSIGL 181 L +VD L + VDLEAQE+ + + +F +DAF++HC++NGLD IGL Sbjct: 120 VLPQEQVDLLMKDAEKGANARMTVDLEAQEISTSDGEVIKFEVDAFKKHCLLNGLDDIGL 179 Query: 182 TLQHDDAIAAYEAK 195 T++ +IA++E K Sbjct: 180 TMEKATSIASFEDK 193 Lambda K H 0.322 0.138 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 140 Number of extensions: 6 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 201 Length of database: 201 Length adjustment: 21 Effective length of query: 180 Effective length of database: 180 Effective search space: 32400 Effective search space used: 32400 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 45 (21.9 bits)
Align candidate GFF2932 PGA1_c29790 (3-isopropylmalate dehydratase small subunit)
to HMM TIGR00171 (leuD: 3-isopropylmalate dehydratase, small subunit (EC 4.2.1.33))
../bin/blast/fastacmd -i /tmp/list.4542.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.4542.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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