Align Argininosuccinate synthase; Citrulline--aspartate ligase; EC 6.3.4.5 (characterized)
to candidate PP_1088 PP_1088 Argininosuccinate synthase
Query= SwissProt::P59846 (400 letters) >FitnessBrowser__Putida:PP_1088 Length = 405 Score = 500 bits (1288), Expect = e-146 Identities = 250/393 (63%), Positives = 300/393 (76%), Gaps = 3/393 (0%) Query: 2 KIVLAYSGGLDTSIILKWLKETYRAEVIAFTADIGQGEEVEEAREKALRTGASKAIALDL 61 K+VLAYSGGLDTS+ILKWL++TY EV+ FTAD+GQGEEVE AR KA G + DL Sbjct: 6 KVVLAYSGGLDTSVILKWLQDTYNCEVVTFTADLGQGEEVEPARAKAQAMGVKEIYIDDL 65 Query: 62 KEEFVRDFVFPMMRAGAVYEGYYLLGTSIARPLIAKHLVRIAEEEGAEAIAHGATGKGND 121 +EEFVRDFVFPM RA VYEG YLLGTSIARPLIAK L+ IA E GA+AI+HGATGKGND Sbjct: 66 REEFVRDFVFPMFRANTVYEGEYLLGTSIARPLIAKRLIEIANETGADAISHGATGKGND 125 Query: 122 QVRFELTAYALKPDIKVIAPWREWSFQGRKEMIAYAEAHGIPVPVTQEK--PYSMDANLL 179 QVRFEL AYALKP +KVIAPWREW R++++ YAE HGIP+ +K PYSMDANLL Sbjct: 126 QVRFELGAYALKPGVKVIAPWREWDLLSREKLMDYAEKHGIPIERHGKKKSPYSMDANLL 185 Query: 180 HISYEGGVLEDPWAEPPKGMFRMTQDPEEAPDAPEYVEVEFFEGDPVAVNGERLSPAALL 239 HISYEGGVLED W E + M+R + PE APD Y+E+ + GD VA++G SPA +L Sbjct: 186 HISYEGGVLEDTWTEHEEDMWRWSVSPENAPDQATYIELTYRNGDIVAIDGVEKSPATVL 245 Query: 240 QRLNEIGGRHGVGRVDIVENRFVGMKSRGVYETPGGTILYHARRAVESLTLDREVLHQRD 299 LN IGG +G+GR+DIVENR+VGMKSRG YETPGGTI+ A RA+ES+TLDREV H +D Sbjct: 246 ADLNRIGGANGIGRLDIVENRYVGMKSRGCYETPGGTIMLKAHRAIESITLDREVAHLKD 305 Query: 300 MLSPKYAELVYYGFWYAPEREALQAYFDHVARSVTGVARLKLYKGNVYVVGRKAPKSLYR 359 L PKYA L+Y G+W++PER LQ D +V GV RLKLYKGNV VVGRK+ SL+ Sbjct: 306 ELMPKYASLIYTGYWWSPERLMLQQMIDASQVNVNGVVRLKLYKGNVTVVGRKSDDSLFD 365 Query: 360 QDLVSFDEAGG-YDQKDAEGFIKIQALRLRVRA 391 ++ +F+E GG Y+Q DA GFIK+ ALR+R+ A Sbjct: 366 ANIATFEEDGGAYNQADAAGFIKLNALRMRIAA 398 Lambda K H 0.319 0.137 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 497 Number of extensions: 18 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 400 Length of database: 405 Length adjustment: 31 Effective length of query: 369 Effective length of database: 374 Effective search space: 138006 Effective search space used: 138006 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 50 (23.9 bits)
Align candidate PP_1088 PP_1088 (Argininosuccinate synthase)
to HMM TIGR00032 (argG: argininosuccinate synthase (EC 6.3.4.5))
../bin/blast/fastacmd -i /tmp/list.27066.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.27066.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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