Align 3-dehydroquinate synthase, chloroplastic; EC 4.2.3.4 (characterized)
to candidate PP_5078 PP_5078 3-dehydroquinate synthase
Query= SwissProt::Q8RU74 (442 letters) >FitnessBrowser__Putida:PP_5078 Length = 365 Score = 436 bits (1121), Expect = e-127 Identities = 227/358 (63%), Positives = 269/358 (75%), Gaps = 5/358 (1%) Query: 81 VEVDLGTRSYPIYIGAGLLDQPDLLQRHIHGKRVLVVTNTTVAPLYLDKTISALTDGNPN 140 ++VDLG RSYPIYIG GLLDQP+LL HI G++V +V+N TVAPLYL++ AL Sbjct: 4 LKVDLGERSYPIYIGEGLLDQPELLAPHIAGRQVAIVSNETVAPLYLERLSKALGA---- 59 Query: 141 VTVESVILPDGEQFKNMETLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRG 200 +V V+LPDGE KN ETL +FD + +R DRR T VALGGGVIGDM G+AAA Y RG Sbjct: 60 YSVLPVVLPDGEAHKNWETLQLIFDGLLTARHDRRTTVVALGGGVIGDMAGFAAACYQRG 119 Query: 201 VNFIQIPTTVMAQVDSSVGGKTGINHPLGKNMIGAFYQPQCVLIDTDTLNTLPDRELASG 260 V+FIQ+PTT+++QVDSSVGGKTGINHPLGKNM+GAFYQP+ VLIDT +L TLP REL++G Sbjct: 120 VDFIQVPTTLLSQVDSSVGGKTGINHPLGKNMVGAFYQPKAVLIDTTSLKTLPARELSAG 179 Query: 261 LAEVIKYGLIRDAEFFEWQEQNMPLLLARDPTAFTYAIKRSCENKADVVSQDEKESGVRA 320 LAEVIKYGLI D F W E NM L A D A T AI+RSC KA VV DE+ESG+RA Sbjct: 180 LAEVIKYGLICDKPFLAWLEDNMQALRALDSAALTEAIRRSCAAKAAVVGADERESGLRA 239 Query: 321 TLNLGHTFGHAVETGVGYGQWLHGEAVAAGTVMAVDMSRRLGWIDDSLVQRVQKILQQAK 380 TLNLGHTFGHA+ET +GYG WLHGEAVAAGTVMA++MS RLGWID + R ++LQ A Sbjct: 240 TLNLGHTFGHAIETHMGYGVWLHGEAVAAGTVMALEMSMRLGWIDQAERDRGIRLLQDAG 299 Query: 381 LPTSPPETMTVEMFKSIMAVDKKVADGKLRLILLKGSLGNCVFTGDYDQKALDETLRA 438 LP PP+ MT F MAVDKKV DG+LRL+LL+ +G V T DY ++ L TL A Sbjct: 300 LPVVPPQEMTPAHFMEHMAVDKKVLDGRLRLVLLR-QMGEAVVTDDYSKEILQATLSA 356 Lambda K H 0.318 0.133 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 411 Number of extensions: 9 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 442 Length of database: 365 Length adjustment: 31 Effective length of query: 411 Effective length of database: 334 Effective search space: 137274 Effective search space used: 137274 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 50 (23.9 bits)
Align candidate PP_5078 PP_5078 (3-dehydroquinate synthase)
to HMM TIGR01357 (aroB: 3-dehydroquinate synthase (EC 4.2.3.4))
../bin/blast/fastacmd -i /tmp/list.7269.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.7269.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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