Align 3-dehydroquinate dehydratase; 3-dehydroquinase; Type II DHQase; EC 4.2.1.10 (characterized)
to candidate PP_0560 PP_0560 3-dehydroquinate dehydratase 1, type II
Query= SwissProt::P43877 (154 letters) >FitnessBrowser__Putida:PP_0560 Length = 151 Score = 189 bits (480), Expect = 2e-53 Identities = 96/144 (66%), Positives = 113/144 (78%), Gaps = 1/144 (0%) Query: 1 MKKILLLNGPNLNMLGKREPHIYGSQTLSDIEQHLQQSAQAQGYELDYFQANGEESLINR 60 M +L+L+GPNLN+LG REP YG+ TL+ I Q L+Q A+A G+ L Y Q+N E LI+R Sbjct: 1 MATLLVLHGPNLNLLGTREPGHYGAVTLAQINQDLEQRARAAGHHLLYLQSNAEYELIDR 60 Query: 61 IHQAF-QNTDFIIINPGAFTHTSVAIRDALLAVSIPFIEVHLSNVHAREPFRHHSYLSDV 119 IH A + DFI+INP AFTHTSVA+RDALLAVSIPFIEVHLSNVH REPFRHHSY SDV Sbjct: 61 IHAARNEGVDFILINPAAFTHTSVALRDALLAVSIPFIEVHLSNVHKREPFRHHSYFSDV 120 Query: 120 AKGVICGLGAKGYDYALDFAISEL 143 A GVICGLGA GY AL+ A+ +L Sbjct: 121 AVGVICGLGASGYRLALESALEQL 144 Lambda K H 0.320 0.137 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 114 Number of extensions: 5 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 154 Length of database: 151 Length adjustment: 17 Effective length of query: 137 Effective length of database: 134 Effective search space: 18358 Effective search space used: 18358 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 43 (21.2 bits)
Align candidate PP_0560 PP_0560 (3-dehydroquinate dehydratase 1, type II)
to HMM TIGR01088 (aroQ: 3-dehydroquinate dehydratase, type II (EC 4.2.1.10))
../bin/blast/fastacmd -i /tmp/list.19630.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.19630.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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