Align 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; EC 5.3.1.16; Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (uncharacterized)
to candidate PP_0292 PP_0292 phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide isomerase
Query= curated2:B7GVK1 (243 letters) >FitnessBrowser__Putida:PP_0292 Length = 245 Score = 327 bits (837), Expect = 2e-94 Identities = 167/241 (69%), Positives = 193/241 (80%), Gaps = 2/241 (0%) Query: 1 MLIIPAIDLKDGKCVRLKQGRMEDDTVFSDDPVATAQHWVNEGARRLHLVDLNGAFAGTP 60 MLIIPAIDLKDG CVRL+QGRMED TVFSDDPV+ A WV G RRLHLVDLNGAF G P Sbjct: 1 MLIIPAIDLKDGACVRLRQGRMEDSTVFSDDPVSMAAKWVEGGCRRLHLVDLNGAFEGQP 60 Query: 61 IHKPVVEAIAKAQPELPIQIGGGIRSLETIEHYLEAGVTFVIIGTKAVQEPEFVEEACKR 120 ++ VV AIAK P LPIQIGGGIRSLETIEHY++AGV++VIIGTKAV++PEFV EACK Sbjct: 61 VNGEVVTAIAKRYPNLPIQIGGGIRSLETIEHYVKAGVSYVIIGTKAVKQPEFVAEACKA 120 Query: 121 FAGHIIVGIDAMNGMVATDGWANVTDVKATDLAKRFADAGVSSIVYTDIARDGMMQGVNV 180 F G +IVG+DA +G VATDGWA V+ V+ DLAKRF GVS+IVYTDIA+DGMMQG NV Sbjct: 121 FPGKVIVGLDAKDGFVATDGWAEVSSVQVIDLAKRFEADGVSAIVYTDIAKDGMMQGCNV 180 Query: 181 EQTVNLAQYSGLPVIASGGVTNLDDVRNL--KGQPGILGAITGRAIYEGTLNLREAQLLL 238 T LA+ + +PVIASGG+ NL D++ L PGI+GAITGRAIYEGTL++ EAQ Sbjct: 181 PFTKALAEATRIPVIASGGIHNLGDIKALLDAKAPGIIGAITGRAIYEGTLDVAEAQAFC 240 Query: 239 D 239 D Sbjct: 241 D 241 Lambda K H 0.319 0.137 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 285 Number of extensions: 10 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 243 Length of database: 245 Length adjustment: 24 Effective length of query: 219 Effective length of database: 221 Effective search space: 48399 Effective search space used: 48399 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 46 (22.3 bits)
Align candidate PP_0292 PP_0292 (phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide isomerase)
to HMM TIGR00007 (hisA: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase (EC 5.3.1.16))
../bin/blast/fastacmd -i /tmp/list.12379.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.12379.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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