GapMind for Amino acid biosynthesis

 

Alignments for a candidate for hisC in Pseudomonas putida KT2440

Align Histidinol-phosphate aminotransferase; EC 2.6.1.9; Imidazole acetol-phosphate transaminase (uncharacterized)
to candidate PP_0967 PP_0967 Histidinol-phosphate aminotransferase

Query= curated2:Q48ED0
         (350 letters)



>FitnessBrowser__Putida:PP_0967
          Length = 348

 Score =  575 bits (1483), Expect = e-169
 Identities = 286/348 (82%), Positives = 308/348 (88%)

Query: 1   MSKFWSPFVSGLVPYVPGEQPKLTRLVKLNTNENPYGPSPKAVEAMRAALTDDLRLYPDP 60
           MS+FWSPFV  LVPYVPGEQPKL RLVKLNTNENPYGPSPKA+EAMR  L D+LRLYPDP
Sbjct: 1   MSRFWSPFVKDLVPYVPGEQPKLARLVKLNTNENPYGPSPKALEAMRGELNDNLRLYPDP 60

Query: 61  NSDLLKHAVADYYKVQPNQVFLGNGSDEVLAHIFHALFQHDASLLFPDISYSFYPVYCGL 120
           N D LK AVA+YY V P QVF+GNGSDEVLAHIFH LFQHDA LLFPDISYSFYPVYCGL
Sbjct: 61  NGDRLKQAVAEYYGVTPAQVFVGNGSDEVLAHIFHGLFQHDAPLLFPDISYSFYPVYCGL 120

Query: 121 YGIDYEMIALDDQFQIRAEDYAKPNAGIIFPNPNAPTGCLLGLDKVEQIIKASPDSVVVV 180
           YGI +E +ALD+QFQIR EDY KPNAGIIFPNPNAPTGCL+ L  VE++++A+ DSVVVV
Sbjct: 121 YGIAFEQVALDEQFQIRIEDYKKPNAGIIFPNPNAPTGCLMPLQAVEELLQANRDSVVVV 180

Query: 181 DEAYIDFGGETAITLVDRYPNLLVTQTLSKSRSLAGLRVGLAVGHSDLIEALERVKNSFN 240
           DEAYIDFGGETAI+LVDRY NLLVTQTLSKSRSLAGLRVGLAVGH DLIEALER+KNSFN
Sbjct: 181 DEAYIDFGGETAISLVDRYDNLLVTQTLSKSRSLAGLRVGLAVGHPDLIEALERIKNSFN 240

Query: 241 SYPLDRMANVGGAAAFEDREHFESTRNKVIESREALVEQLQGKGFEVLPSAANFIFARHP 300
           SYPLDR A VG A AFEDRE+FE T  KVI+SRE LV QLQ KGFEVLPSAANFIFARHP
Sbjct: 241 SYPLDRAAIVGAAVAFEDREYFEETCRKVIDSREVLVGQLQAKGFEVLPSAANFIFARHP 300

Query: 301 QHDAAALAAKLREQGVIVRHFKQQRIAQFLRISIGTPEQHQALLEGLS 348
           Q DA  LAA+LREQGVIVRHFKQ RIAQFLRI+IGTPE +QALL+ LS
Sbjct: 301 QQDAGELAARLREQGVIVRHFKQPRIAQFLRITIGTPEMNQALLDALS 348


Lambda     K      H
   0.319    0.137    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 498
Number of extensions: 12
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 348
Length adjustment: 29
Effective length of query: 321
Effective length of database: 319
Effective search space:   102399
Effective search space used:   102399
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate PP_0967 PP_0967 (Histidinol-phosphate aminotransferase)
to HMM TIGR01141 (hisC: histidinol-phosphate transaminase (EC 2.6.1.9))

Software error:

../bin/blast/fastacmd -i /tmp/list.9208.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.9208.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.