GapMind for Amino acid biosynthesis

 

Alignments for a candidate for hisN in Pseudomonas putida KT2440

Align Histidinol-phosphatase [alternative form] (EC 3.1.3.15) (characterized)
to candidate PP_3157 PP_3157 Inositol monophosphatase family protein

Query= reanno::Phaeo:GFF2154
         (250 letters)



>FitnessBrowser__Putida:PP_3157
          Length = 263

 Score =  241 bits (614), Expect = 1e-68
 Identities = 128/248 (51%), Positives = 164/248 (66%), Gaps = 6/248 (2%)

Query: 1   MADAARQAILPYFRSAGLQSDNKLDEGFDPVTIADRAAEQAMRSVLSELRPEDSILGEEF 60
           +ADAA  AI PYFR A L  ++K    +DPVT+AD+AAE AMR ++    PE  ILGEE 
Sbjct: 18  LADAAAAAIAPYFR-ASLDVEDKGGRLYDPVTVADKAAEDAMRELIQARYPEHGILGEEA 76

Query: 61  GETHGQSGRTWVLDPIDGTRGFISGTPTWGVLIALGDADGPFLGIVDQPYIGERFIGTPE 120
           G   G S  TWVLDPIDGTR FI+G P WG LIAL D   P LG+++QP+ GERF+GTP 
Sbjct: 77  GIAVGSSPLTWVLDPIDGTRAFITGLPLWGTLIALNDGARPVLGVMNQPFTGERFVGTPA 136

Query: 121 GASLTGPLGHSALVTRATDSLSEATLFTTFPEVGTEAER-AAFQRVSAQVRLTRYGMDCY 179
           GA  +G    + L TRA   LS ATL  T P++   AER AAF+ V+ + RL RYG DCY
Sbjct: 137 GAWRSG----TPLKTRACADLSAATLMCTTPDMFDTAERKAAFEAVAGKARLMRYGGDCY 192

Query: 180 AYALLAAGQCDLVIEAGLNAYDIQAPIAVIQAAGGVVTNWQGEPAHEGGQVLAAATAELH 239
           AY +LA+G  D+++EA L  YD+QA + +I+ AGGV+T W G  A +GG V+A     LH
Sbjct: 193 AYCMLASGFVDVIVEASLQPYDVQALMPIIEGAGGVITAWDGSSAQDGGCVVACGDPVLH 252

Query: 240 AAALALIQ 247
           A  L +++
Sbjct: 253 AQVLEMLR 260


Lambda     K      H
   0.317    0.134    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 219
Number of extensions: 9
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 263
Length adjustment: 24
Effective length of query: 226
Effective length of database: 239
Effective search space:    54014
Effective search space used:    54014
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)

Align candidate PP_3157 PP_3157 (Inositol monophosphatase family protein)
to HMM TIGR02067 (hisN: histidinol-phosphatase (EC 3.1.3.15))

Software error:

../bin/blast/fastacmd -i /tmp/list.381.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.381.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.