Align 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) (characterized)
to candidate PP_1237 PP_1237 4-hydroxy-tetrahydrodipicolinate synthase
Query= BRENDA::Q9I4W3 (292 letters) >FitnessBrowser__Putida:PP_1237 Length = 295 Score = 448 bits (1152), Expect = e-131 Identities = 228/294 (77%), Positives = 254/294 (86%), Gaps = 3/294 (1%) Query: 1 MIAGSMVALVTPFDAQGRLDWDSLAKLVDFHLQEGTNAIVAVGTTGESATLDVEEHIQVI 60 MIAGSMVALVTP DAQGR+DW SL KLVDFHL+ GT+AIVAVGTTGESATLDVEEHI VI Sbjct: 1 MIAGSMVALVTPMDAQGRVDWGSLDKLVDFHLENGTHAIVAVGTTGESATLDVEEHILVI 60 Query: 61 RRVVDQVKGR---IPVIAGTGANSTREAVALTEAAKSGGADACLLVTPYYNKPTQEGMYQ 117 + VV++VK IPVIAGTGANST EAV LT+ AK+ GADACLLV PYYNKPTQEG+YQ Sbjct: 61 KHVVERVKRSAKPIPVIAGTGANSTAEAVHLTQNAKNAGADACLLVVPYYNKPTQEGLYQ 120 Query: 118 HFRHIAEAVAIPQILYNVPGRTSCDMLPETVERLSKVPNIIGIKEATGDLQRAKEVIERV 177 HF+HIAEAV IPQILYNVPGRTSCDM ETV RLS VPNIIGIKEATGDL RAK +++ V Sbjct: 121 HFKHIAEAVDIPQILYNVPGRTSCDMQAETVIRLSTVPNIIGIKEATGDLARAKAILDGV 180 Query: 178 GKDFLVYSGDDATAVELMLLGGKGNISVTANVAPRAMSDLCAAAMRGDAAAARAINDRLM 237 KDF+V SGDD TAVEL+L+GGKGNISVTANVAPR M+DLC AA+ G+A ARAIN++LM Sbjct: 181 SKDFIVMSGDDPTAVELILMGGKGNISVTANVAPREMADLCEAALEGNAEKARAINEKLM 240 Query: 238 PLHKALFIESNPIPVKWALHEMGLIPEGIRLPLTWLSPRCHEPLRQAMRQTGVL 291 PLHK LF ESNPIPVKWAL EMGL+ +GIRLPLTWLS CHE +R A+RQ+GVL Sbjct: 241 PLHKDLFCESNPIPVKWALVEMGLMQKGIRLPLTWLSEGCHEKVRTALRQSGVL 294 Lambda K H 0.319 0.134 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 329 Number of extensions: 7 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 292 Length of database: 295 Length adjustment: 26 Effective length of query: 266 Effective length of database: 269 Effective search space: 71554 Effective search space used: 71554 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 48 (23.1 bits)
Align candidate PP_1237 PP_1237 (4-hydroxy-tetrahydrodipicolinate synthase)
to HMM TIGR00674 (dapA: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7))
../bin/blast/fastacmd -i /tmp/list.3311.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.3311.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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