Align 4-hydroxy-tetrahydrodipicolinate synthase; HTPA synthase; EC 4.3.3.7 (characterized)
to candidate PP_2639 PP_2639 4-hydroxy-tetrahydrodipicolinate synthase
Query= SwissProt::Q57695 (289 letters) >FitnessBrowser__Putida:PP_2639 Length = 288 Score = 166 bits (421), Expect = 4e-46 Identities = 99/287 (34%), Positives = 156/287 (54%), Gaps = 4/287 (1%) Query: 2 FKGVYPAIITPFKNKEVDFDGLEENINFLIENGVSGIVAVGTTGESPTLSHEEHKKVIEK 61 F+G++ A++TP + E+DF GLE+ + L+E+GV+G V GTTGE+ LS E V++ Sbjct: 4 FRGIWIALVTPMRANEIDFPGLEKLVKKLLEDGVAGFVVCGTTGEAAALSKAEQLAVLDA 63 Query: 62 VVDVVNGRVQVIAGAGSNCTEE-AIELSVFAEDVGADAVLSITPYYNKPTQEGLRKHFGK 120 V+ V V+ +G N E A + + D+G +L P Y +P+Q G+ F Sbjct: 64 VLAWVEPGRMVMGLSGYNLRELLAFQAEIQQRDIGG--LLVPAPCYIRPSQAGIEAFFAT 121 Query: 121 VAESINLPIVLYNVPSRTAVNLEPKTVKLLAEEYSNISAVKEANPNLSQVSELIHDAKIT 180 VA++ ++P+++Y++P RT V +E +T++ + + I+AVK+ + LI D Sbjct: 122 VADAASVPVIVYDIPYRTGVRIERETLRRIVR-HPRIAAVKDCGGDSETTMALIEDGHAQ 180 Query: 181 VLSGNDELTLPIIALGGKGVISVVANIVPKEFVEMVNYALEGDFEKAREIHYKLFPLMKA 240 VL+G D + LGG G IS A++ +V MV GD+ AR Y+L P +K Sbjct: 181 VLAGEDLQIFNNLCLGGAGAISASAHVRADLYVRMVRQVDSGDWAAARGTFYQLLPWIKV 240 Query: 241 MFIETNPIPVKTALNMMGRPAGELRLPLCEMSEEHKKILENVLKDLG 287 F E NP VK AL + A ELR P+ + + L++VL LG Sbjct: 241 AFAEPNPAVVKAALQLQSLIADELREPMQTCTNTTRDKLQSVLCSLG 287 Lambda K H 0.315 0.135 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 159 Number of extensions: 6 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 289 Length of database: 288 Length adjustment: 26 Effective length of query: 263 Effective length of database: 262 Effective search space: 68906 Effective search space used: 68906 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 48 (23.1 bits)
Align candidate PP_2639 PP_2639 (4-hydroxy-tetrahydrodipicolinate synthase)
to HMM TIGR00674 (dapA: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7))
../bin/blast/fastacmd -i /tmp/list.17042.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.17042.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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