Align Homoserine kinase; HK; HSK; EC 2.7.1.39 (characterized)
to candidate PP_0121 PP_0121 homoserine kinase
Query= SwissProt::P29364 (316 letters) >FitnessBrowser__Putida:PP_0121 Length = 316 Score = 457 bits (1175), Expect = e-133 Identities = 223/316 (70%), Positives = 257/316 (81%) Query: 1 MSVFTPLERSTLEAFLAPYDLGRLRDFRGIAEGSENSNFFVSLEHGEFVLTLVERGPVQD 60 MSVFTP+ R LE FLAPY+LGRL DF+GIA G+ENSNFFVSLE GEFVLTL+ERGP +D Sbjct: 1 MSVFTPVTRPELETFLAPYELGRLLDFQGIAAGTENSNFFVSLEQGEFVLTLIERGPSED 60 Query: 61 LPFFIELLDVLHEDGLPVPYALRTRDGEALRRLEGKPALLQPRLAGRHERQPNAHHCQEV 120 +PFFIELLD LH +PVPYA+R RDG LR L GKPALLQPRL+G+H + PN HC +V Sbjct: 61 MPFFIELLDTLHGADMPVPYAIRDRDGNGLRELCGKPALLQPRLSGKHIKAPNNQHCAQV 120 Query: 121 GDLLGHLHAATRGRILERPSDRGLPWMLEQGANLAPRLPEQARALLAPALAEIAALDAER 180 G+LL H+H ATR I+ER +DRGL WML GA L PRL + ALL PAL EI+A A+ Sbjct: 121 GELLAHIHLATREHIIERRTDRGLDWMLASGAELLPRLTAEQAALLQPALDEISAHKAQI 180 Query: 181 PALPRANLHADLFRDNVLFDGPHLAGLIDFYNACSGWMLYDLAITLNDWCSNTDGSLDPA 240 ALPRANLHADLFRDNV+F+G HL G+IDFYNACSG MLYD+AIT+NDWC + G++D Sbjct: 181 LALPRANLHADLFRDNVMFEGTHLTGVIDFYNACSGPMLYDIAITVNDWCLDEQGAVDVP 240 Query: 241 RARALLAAYANRRPFTALEAEHWPSMLRVACVRFWLSRLIAAEAFAGQDVLIHDPAEFEI 300 RA+ALLAAYA RPFTA EAE WP MLRV CVRFWLSRLIAAE+FAG DV+IHDP+EFE+ Sbjct: 241 RAQALLAAYAALRPFTAAEAELWPEMLRVGCVRFWLSRLIAAESFAGMDVMIHDPSEFEV 300 Query: 301 RLAQRQNVEIHLPFAL 316 RLAQRQ V +HLPFAL Sbjct: 301 RLAQRQQVALHLPFAL 316 Lambda K H 0.324 0.140 0.434 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 382 Number of extensions: 7 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 316 Length of database: 316 Length adjustment: 27 Effective length of query: 289 Effective length of database: 289 Effective search space: 83521 Effective search space used: 83521 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 48 (23.1 bits)
Align candidate PP_0121 PP_0121 (homoserine kinase)
to HMM TIGR00938 (thrB: homoserine kinase (EC 2.7.1.39))
../bin/blast/fastacmd -i /tmp/list.17326.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.17326.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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