Align Phenylalanine 4-monooxygenase (EC 1.14.16.1) (characterized)
to candidate PP_4490 PP_4490 phenylalanine-4-hydroxylase
Query= reanno::pseudo13_GW456_L13:PfGW456L13_4394 (261 letters) >FitnessBrowser__Putida:PP_4490 Length = 262 Score = 493 bits (1268), Expect = e-144 Identities = 233/261 (89%), Positives = 249/261 (95%) Query: 1 MKQTQYVAREPDAQGFIDYPAEEHAVWNTLITRQLKVIEGRACQEYLDGIEKLGLPHDRI 60 MKQTQYVAREPDA GFIDYP +EHAVWNTLITRQLKVIEGRACQEYLDGI++L LPHDRI Sbjct: 1 MKQTQYVAREPDAHGFIDYPQQEHAVWNTLITRQLKVIEGRACQEYLDGIDQLKLPHDRI 60 Query: 61 PQLGEINKVLAETTGWQVARVPALIPFQTFFELLASKQFPVATFIRTREELDYLQEPDIF 120 PQLGEINKVL TTGWQVARVPALIPFQTFFELLASK+FPVATFIRT EELDYLQEPDIF Sbjct: 61 PQLGEINKVLGATTGWQVARVPALIPFQTFFELLASKRFPVATFIRTPEELDYLQEPDIF 120 Query: 121 HEIFGHCPLLTNPWFAEFTHTYGKLGLKASKEERVYLARLYWMTIEFGLLDTPQGQRIYG 180 HEIFGHCPLLTNPWFAEFTHTYGKLGL A+KE+RVYLARLYWMTIEFGL++T QG++IYG Sbjct: 121 HEIFGHCPLLTNPWFAEFTHTYGKLGLAATKEQRVYLARLYWMTIEFGLMETAQGRKIYG 180 Query: 181 GGILSSPKETVYSLSNEPEHQAFDPLECMRTPYRIDILQPLYFVLPNLKRLFDLAHEDIM 240 GGILSSPKETVYSLS+EPEHQAFDP+E MRTPYRIDILQP+YFVLPN+KRLFDLAHEDIM Sbjct: 181 GGILSSPKETVYSLSDEPEHQAFDPIEAMRTPYRIDILQPVYFVLPNMKRLFDLAHEDIM 240 Query: 241 GMVKQAMQMGLHTPKFPPKAA 261 GMV +AMQ+GLH PKFPPK A Sbjct: 241 GMVHKAMQLGLHAPKFPPKVA 261 Lambda K H 0.322 0.140 0.435 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 385 Number of extensions: 9 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 261 Length of database: 262 Length adjustment: 25 Effective length of query: 236 Effective length of database: 237 Effective search space: 55932 Effective search space used: 55932 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 47 (22.7 bits)
Align candidate PP_4490 PP_4490 (phenylalanine-4-hydroxylase)
to HMM TIGR01267 (phhA: phenylalanine-4-hydroxylase (EC 1.14.16.1))
../bin/blast/fastacmd -i /tmp/list.25187.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.25187.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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