Align Succinylornithine transaminase (EC 2.6.1.81) (characterized)
to candidate 6938908 Sama_3011 bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein (RefSeq)
Query= reanno::pseudo1_N1B4:Pf1N1B4_3440 (406 letters) >FitnessBrowser__SB2B:6938908 Length = 404 Score = 536 bits (1381), Expect = e-157 Identities = 258/394 (65%), Positives = 315/394 (79%) Query: 10 RADFDQVMVPNYAPAAFIPVRGAGSRVWDQSGRELIDFAGGIAVNVLGHAHPALVAALTE 69 RA FD+VMVPNYAPAA IPVRG GSRVWDQ G E +DFAGGIAVN LGH HPALV AL E Sbjct: 9 RAQFDEVMVPNYAPAAVIPVRGEGSRVWDQQGTEYVDFAGGIAVNCLGHCHPALVGALKE 68 Query: 70 QANKLWHVSNVFTNEPALRLAHKLVDATFAERVFFCNSGAEANEAAFKLARRVAHDRFGT 129 Q KLWH+SN TNEPAL LA KLV+ATFA+RV+F NSGAEANEAA KLARR A ++FG Sbjct: 69 QGEKLWHLSNTMTNEPALALATKLVEATFADRVYFANSGAEANEAALKLARRYAIEKFGE 128 Query: 130 EKYEIVAALNSFHGRTLFTVNVGGQSKYSDGFGPKITGITHVPYNDLAALKAAVSDKTCA 189 K E++A +FHGRT FTV+VGGQ+ YSDGFGPK ITH+P+ND+AAL+AAVSD TCA Sbjct: 129 HKVEVIAFDKAFHGRTFFTVSVGGQAAYSDGFGPKPAAITHLPFNDIAALEAAVSDNTCA 188 Query: 190 VVLEPIQGEGGVLPAELSYLQGARELCDAHNALLVFDEVQTGMGRSGKLFAYQHYGVTPD 249 ++LEP+QGEGG++ + +L+ R L D HNAL++FDEVQTG+GR+G L+AY + PD Sbjct: 189 IMLEPLQGEGGIINGDPEFLRAVRRLADKHNALVIFDEVQTGVGRTGDLYAYMGTEIVPD 248 Query: 250 ILTSAKSLGGGFPIAAMLTTEDLAKHLVVGTHGTTYGGNPLACAVAEAVIDVINTPEVLN 309 ILT+AK+LGGGFPIAAMLTT D+A HL VGTHG+TYGGNPLACA+ AV+DV+NTPEVL+ Sbjct: 249 ILTTAKALGGGFPIAAMLTTADIASHLKVGTHGSTYGGNPLACAIGNAVMDVVNTPEVLD 308 Query: 310 GVNAKHDKFKTRLEQIGEKYGLFTEVRGLGLLLGCVLSDAWKGKAKDIFNAAEREGLMIL 369 GV + F+ L QI EKY +F+E+RG GLLLG VL++ + G+++D NA+ EGL+ L Sbjct: 309 GVKHREQLFRDGLAQINEKYHVFSEIRGKGLLLGAVLNEQFAGRSRDFLNASVAEGLLTL 368 Query: 370 QAGPDVIRFAPSLVVEDADIDAGLDRFERAAAKL 403 AG +V+RF PSLV+ +ADI GL RFERA AK+ Sbjct: 369 MAGANVVRFTPSLVIPEADIVEGLARFERAVAKV 402 Lambda K H 0.320 0.136 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 501 Number of extensions: 8 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 406 Length of database: 404 Length adjustment: 31 Effective length of query: 375 Effective length of database: 373 Effective search space: 139875 Effective search space used: 139875 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 50 (23.9 bits)
Align candidate 6938908 Sama_3011 (bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein (RefSeq))
to HMM TIGR03246 (astC: succinylornithine transaminase family (EC 2.6.1.81))
../bin/blast/fastacmd -i /tmp/list.7449.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.7449.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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