Align argininosuccinate synthase (EC 6.3.4.5) (characterized)
to candidate 6936062 Sama_0259 argininosuccinate synthase (RefSeq)
Query= BRENDA::A4I066 (418 letters) >FitnessBrowser__SB2B:6936062 Length = 407 Score = 418 bits (1075), Expect = e-121 Identities = 210/394 (53%), Positives = 274/394 (69%), Gaps = 3/394 (0%) Query: 15 RVVLAYSGGLDTSVIIPWLKENYDY-EVIACCANVGQGAGEIDGLEEKAKKSGASKLYLL 73 +VVLAYSGGLDTS IIPWLKENYD E++A CA+VGQG E+ GL EKA SGAS+ +++ Sbjct: 12 KVVLAYSGGLDTSAIIPWLKENYDNCEIVAFCADVGQGEEELVGLTEKALASGASECHIV 71 Query: 74 DLREEYVTDYIFPTLKAGATYEGKYMLGTSHARPLIAKHLVEVAHKEGAVAICHGATGKG 133 DL+EE+V DYI+PT+ GA YEG Y+LGTS ARP+IAK VEVA K GA A+CHG TGKG Sbjct: 72 DLKEEFVKDYIYPTIATGAIYEGTYLLGTSMARPIIAKAQVEVARKVGADALCHGCTGKG 131 Query: 134 NDQVRFELAVMALDPSLKCVAPWREWNIKSREDAIDYAEAHGVPVPCTKSDLYSRDRNLW 193 NDQVRFE AL P LK +APWREW+++SRED + Y + + + +YSRD N W Sbjct: 132 NDQVRFEGCFAALAPDLKVIAPWREWDMESREDLLAYLAERNIKTSASATKIYSRDANAW 191 Query: 194 HISHEGMDLEDPANEPAYARLLRLCNTVEKAPDEAEYVTVQFEKGIPVAVNGRKMSSVEL 253 HISHEG +LEDP NEP+ + ++ APDE EYVT++ E VNG +S + Sbjct: 192 HISHEGGELEDPWNEPSKQVWTMTVDPLD-APDEPEYVTLKIENARVTEVNGEALSPYQA 250 Query: 254 VEELNALGGKHAIGIEDIVEDRLVGMKSRGVYETPAGTILYKALDMLESLCLDRDTQSFK 313 + +LNA+ H +G DI E+RLVGMKSRG YETP GT+++ AL +E L LD+ ++ ++ Sbjct: 251 LMKLNAIAAPHGVGRIDITENRLVGMKSRGCYETPGGTVMFAALRAVEELVLDKSSREWR 310 Query: 314 RQSAVRFSELVYDGKWFTPLRESMSAMFDQMAETVTGEATLKLYKGNLVPAGAQSPYSLY 373 Q A R + LVYDG+WFTPL +S+ A + +A V GE +KLYKG VP +SP SLY Sbjct: 311 EQVAARMAHLVYDGRWFTPLCDSLLAASESLATMVNGEVVVKLYKGQAVPVKKRSPNSLY 370 Query: 374 NKNIASFGDSQHLYNHHDAEGFIRLFGLPLRVRS 407 ++ A+FG +Y+ AEGFIRL+ L R+R+ Sbjct: 371 SEAFATFGQDS-VYDQKHAEGFIRLYSLASRIRA 403 Lambda K H 0.317 0.134 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 475 Number of extensions: 13 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 418 Length of database: 407 Length adjustment: 31 Effective length of query: 387 Effective length of database: 376 Effective search space: 145512 Effective search space used: 145512 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 50 (23.9 bits)
Align candidate 6936062 Sama_0259 (argininosuccinate synthase (RefSeq))
to HMM TIGR00032 (argG: argininosuccinate synthase (EC 6.3.4.5))
../bin/blast/fastacmd -i /tmp/list.31451.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.31451.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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