Align Aspartate-semialdehyde dehydrogenase 2; ASA dehydrogenase 2; ASADH 2; Aspartate-beta-semialdehyde dehydrogenase 2; EC 1.2.1.11 (characterized)
to candidate 6938019 Sama_2152 aspartate-semialdehyde dehydrogenase (RefSeq)
Query= SwissProt::P23247 (337 letters) >FitnessBrowser__SB2B:6938019 Length = 338 Score = 488 bits (1256), Expect = e-143 Identities = 239/337 (70%), Positives = 276/337 (81%), Gaps = 1/337 (0%) Query: 1 MSQQFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYRFNGKTVRVQNVE 60 MSQ+FNV + GA+GAVG+TM+E+L+ER FPV +LF LAS RS G T F+GK V + +VE Sbjct: 1 MSQEFNVVVLGASGAVGQTMIEILEERNFPVAKLFPLASARSAGDTVSFHGKQVEILDVE 60 Query: 61 EFDWSQVHIALFSAGGELSAKWAPIAAEAGVVVIDNTSHFRYDYDIPLVVPEVNPEAIAE 120 FDWSQ I FSAGG++SAKWAPIAAE G VVIDNTSHFRYD DIPLVVPEVNPEAIA+ Sbjct: 61 TFDWSQAQIGFFSAGGDVSAKWAPIAAEHGCVVIDNTSHFRYDLDIPLVVPEVNPEAIAD 120 Query: 121 FRNRNIIANPNCSTIQMLVALKPIYDAVGIERINVTTYQSVSGAGKAGIDELAGQTAKLL 180 FRNRNIIANPNCSTIQMLVALKPIYDA GI+RINV TYQSVSG GK I+ELAGQ AKLL Sbjct: 121 FRNRNIIANPNCSTIQMLVALKPIYDAYGIDRINVCTYQSVSGTGKKAIEELAGQCAKLL 180 Query: 181 NGYPAETNTFSQQIAFNCIPQIDQFMDNGYTKEEMKMVWETQKIFNDPSIMVNPTCVRVP 240 G P E + + +QIAFN +P ID+F DNGYTKEEMKMVWET+KIF D SI+VNPT VRVP Sbjct: 181 QGLPIEPSVYPKQIAFNVLPHIDKFQDNGYTKEEMKMVWETRKIFGDDSILVNPTAVRVP 240 Query: 241 VFYGHAEAVHVETRAPIDAEQVMDMLEQTDGIELFR-GADFPTQVRDAGGKDHVLVGRVR 299 VFYGH+EAVH+ETR P+DA+ V +L G+ LF D+PT V D G+D V VGRVR Sbjct: 241 VFYGHSEAVHIETRDPVDADTVKALLRDAPGVVLFEDDDDYPTAVTDGAGQDPVFVGRVR 300 Query: 300 NDISHHSGINLWVVADNVRKGAATNAVQIAELLVRDY 336 NDISH +GINLWVV+DN+RKGAA N+VQI E+L+RDY Sbjct: 301 NDISHPNGINLWVVSDNIRKGAALNSVQIGEILIRDY 337 Lambda K H 0.319 0.135 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 410 Number of extensions: 6 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 337 Length of database: 338 Length adjustment: 28 Effective length of query: 309 Effective length of database: 310 Effective search space: 95790 Effective search space used: 95790 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 49 (23.5 bits)
Align candidate 6938019 Sama_2152 (aspartate-semialdehyde dehydrogenase (RefSeq))
to HMM TIGR01296 (asd: aspartate-semialdehyde dehydrogenase (EC 1.2.1.11))
../bin/blast/fastacmd -i /tmp/list.10743.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.10743.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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