Align 3-isopropylmalate dehydratase large subunit; EC 4.2.1.33 (characterized)
to candidate 6936140 Sama_0337 isopropylmalate isomerase large subunit (RefSeq)
Query= CharProtDB::CH_024771 (466 letters) >FitnessBrowser__SB2B:6936140 Length = 470 Score = 696 bits (1797), Expect = 0.0 Identities = 342/463 (73%), Positives = 389/463 (84%) Query: 1 MAKTLYEKLFDAHVVYEAENETPLLYIDRHLVHEVTSPQAFDGLRAHGRPVRQPGKTFAT 60 MAKTLYEK++DAH+V E E P++Y+DRHLVHEVTSPQAF GL+ GRP+R KTFAT Sbjct: 1 MAKTLYEKVWDAHLVVEPAGEAPIIYVDRHLVHEVTSPQAFSGLKMAGRPLRAVEKTFAT 60 Query: 61 MDHNVSTQTKDINACGEMARIQMQELIKNCKEFGVELYDLNHPYQGIVHVMGPEQGVTLP 120 MDHN ST++ + A MAR Q++ L NC++F V LYD++HP QGIVHVMGPE G+TLP Sbjct: 61 MDHNTSTKSASLTALSPMARTQVETLADNCRDFNVRLYDIHHPNQGIVHVMGPELGITLP 120 Query: 121 GMTIVCGDSHTATHGAFGALAFGIGTSEVEHVLATQTLKQGRAKTMKIEVQGKAAPGITA 180 G IVCGDSHTATHGAFGALAFGIGTSEVEHVLATQTL+Q +AKTMKIEV+GK A GITA Sbjct: 121 GTVIVCGDSHTATHGAFGALAFGIGTSEVEHVLATQTLRQLKAKTMKIEVRGKVADGITA 180 Query: 181 KDIVLAIIGKTGSAGGTGHVVEFCGEAIRDLSMEGRMTLCNMAIEMGAKAGLVAPDETTF 240 KDIVLAIIGK G GGTG+VVEFCGEAIRDLSMEGRMTLCNMAIEMGAKAG+VAPDETTF Sbjct: 181 KDIVLAIIGKIGMDGGTGYVVEFCGEAIRDLSMEGRMTLCNMAIEMGAKAGMVAPDETTF 240 Query: 241 NYVKGRLHAPKGKDFDDAVAYWKTLQTDEGATFDTVVTLQAEEISPQVTWGTNPGQVISV 300 Y++GR APKG + A+A W+ L TD A FD V L+A I+PQ+TWGTNPGQV+++ Sbjct: 241 AYLEGREFAPKGDAWQQALADWRELHTDADAVFDAEVVLEAAAIAPQLTWGTNPGQVVAI 300 Query: 301 NDNIPDPASFADPVERASAEKALAYMGLKPGIPLTEVAIDKVFIGSCTNSRIEDLRAAAE 360 + +P+PA +PV R S EKALAY+ L PG P+T++AI+KVFIGSCTNSRIEDLRAAA Sbjct: 301 DGVVPNPADETNPVVRTSMEKALAYVDLTPGTPMTDIAINKVFIGSCTNSRIEDLRAAAA 360 Query: 361 IAKGRKVAPGVQALVVPGSGPVKAQAEAEGLDKIFIEAGFEWRLPGCSMCLAMNNDRLNP 420 AKGRKVA GV A+VVPGSG VK QAEAEGLDKIF+EAGFEWRLPGCSMCLAMN+DRL Sbjct: 361 QAKGRKVASGVTAIVVPGSGQVKLQAEAEGLDKIFLEAGFEWRLPGCSMCLAMNDDRLEA 420 Query: 421 GERCASTSNRNFEGRQGRGGRTHLVSPAMAAAAAVTGHFADIR 463 G+RCASTSNRNFEGRQGRG RTHLVSPAMAAAAAV GHF DIR Sbjct: 421 GDRCASTSNRNFEGRQGRGSRTHLVSPAMAAAAAVAGHFVDIR 463 Lambda K H 0.317 0.134 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 796 Number of extensions: 21 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 466 Length of database: 470 Length adjustment: 33 Effective length of query: 433 Effective length of database: 437 Effective search space: 189221 Effective search space used: 189221 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 51 (24.3 bits)
Align candidate 6936140 Sama_0337 (isopropylmalate isomerase large subunit (RefSeq))
to HMM TIGR00170 (leuC: 3-isopropylmalate dehydratase, large subunit (EC 4.2.1.33))
../bin/blast/fastacmd -i /tmp/list.12770.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.12770.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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