Align 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (characterized)
to candidate 6936962 Sama_1136 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase (RefSeq)
Query= CharProtDB::CH_024869 (274 letters) >FitnessBrowser__SB2B:6936962 Length = 274 Score = 444 bits (1142), Expect = e-129 Identities = 221/274 (80%), Positives = 241/274 (87%) Query: 1 MQQLQNIIETAFERRAEITPANADTVTREAVNQVIALLDSGALRVAEKIDGQWVTHQWLK 60 M+ L+ IE AFE RA ITP++ + R V VI +LD G +RVAEKIDGQW +QWLK Sbjct: 1 MEALRQRIEAAFEARANITPSSVEPGVRADVETVINMLDKGEMRVAEKIDGQWHVNQWLK 60 Query: 61 KAVLLSFRINDNQVIEGAESRYFDKVPMKFADYDEARFQKEGFRVVPPAAVRQGAFIARN 120 KAVLLSFRI DN VIEG E++YFDKVPMKFADYDEARF+ E RVVPPAAVR+G+FI +N Sbjct: 61 KAVLLSFRIFDNGVIEGGETKYFDKVPMKFADYDEARFRAEAIRVVPPAAVRKGSFIGKN 120 Query: 121 TVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIED 180 TVLMPSYVN+GAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQA PTIIED Sbjct: 121 TVLMPSYVNLGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQAGPTIIED 180 Query: 181 NCFIGARSEVVEGVIVEEGSVISMGVYIGQSTRIYDRETGEIHYGRVPAGSVVVSGNLPS 240 NCFIGARSE+VEGV+VEEGSVISMGVYIGQSTRIYDRETGEIHYGRVPAGSVVVSG LPS Sbjct: 181 NCFIGARSEIVEGVVVEEGSVISMGVYIGQSTRIYDRETGEIHYGRVPAGSVVVSGTLPS 240 Query: 241 KDGKYSLYCAVIVKKVDAKTRGKVGINELLRTID 274 GKY+LY A+IVKKVD KTRGKVGINELLR +D Sbjct: 241 SCGKYNLYAAIIVKKVDEKTRGKVGINELLRIVD 274 Lambda K H 0.318 0.136 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 336 Number of extensions: 5 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 274 Length of database: 274 Length adjustment: 25 Effective length of query: 249 Effective length of database: 249 Effective search space: 62001 Effective search space used: 62001 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 47 (22.7 bits)
Align candidate 6936962 Sama_1136 (2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase (RefSeq))
to HMM TIGR00965 (dapD: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117))
../bin/blast/fastacmd -i /tmp/list.431.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.431.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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