Align P-protein; EC 4.2.1.51; EC 5.4.99.5 (characterized)
to candidate 6936711 Sama_0898 prephenate dehydratase / chorismate mutase / phospho-2-dehydro-3-deoxyheptonate aldolase (RefSeq)
Query= CharProtDB::CH_024084 (386 letters) >FitnessBrowser__SB2B:6936711 Length = 659 Score = 409 bits (1051), Expect = e-118 Identities = 213/386 (55%), Positives = 275/386 (71%), Gaps = 7/386 (1%) Query: 1 MTSENPLLALREKISALDEKLLALLAERRELAVEVGKAKLLSHRPVRDIDRERDLLERLI 60 M PL RE+I+ +D +L LLA RREL++EV ++K + RPVRD RER+LL RL+ Sbjct: 1 MEKPQPLSETREQITDIDNTVLQLLARRRELSLEVARSKEVDVRPVRDTQRERELLSRLV 60 Query: 61 TLGKAHHLDAHYITRLFQLIIEDSVLTQQALLQQHLNKINPHSAR----IAFLGPKGSYS 116 G+ LD H++ +L+Q IIEDSVL QQA L + NP + + IA+LG +GSYS Sbjct: 61 QKGREQGLDPHFVMQLYQSIIEDSVLNQQAYLH---GRANPETQKQQYCIAYLGARGSYS 117 Query: 117 HLAARQYAARHFEQFIESGCAKFADIFNQVETGQADYAVVPIENTSSGAINDVYDLLQHT 176 +LAA +Y R ++ GC F +I + VE+G ADY +PIENTSSG+IN+VYD+LQHT Sbjct: 118 YLAANRYCQRRQVDMVDLGCQSFDEIVHAVESGHADYGFLPIENTSSGSINEVYDVLQHT 177 Query: 177 SLSIVGEMTLTIDHCLLVSGTTDLSTINTVYSHPQPFQQCSKFLNRYPHWKIEYTESTSA 236 SL+IVGE T+ + HCLL T S I T+Y+HPQP QCS++L R+P ++EY S++ Sbjct: 178 SLAIVGETTIEVGHCLLAKPGTKASDIKTLYAHPQPISQCSRYLARHPGLRLEYCASSAE 237 Query: 237 AMEKVAQAKSPHVAALGSEAGGTLYGLQVLERIEANQRQNFTRFVVLARKAINVSDQVPA 296 AMEKV A S VAA+GS GG LY L+ +E+ ANQ+ N +RF+V+ARKA+ V +Q+PA Sbjct: 238 AMEKVQAADSKDVAAIGSAEGGGLYQLEAIEKGLANQKVNQSRFIVVARKAVAVPEQLPA 297 Query: 297 KTTLLMATGQQAGALVEALLVLRNHNLIMTRLESRPIHGNPWEEMFYLDIQANLESAEMQ 356 K TL+MATGQ+ GALVEALLVL+ +NL M++LESRPI G PWEEMFYLDI ANL S MQ Sbjct: 298 KCTLIMATGQKPGALVEALLVLKANNLNMSKLESRPIPGTPWEEMFYLDIDANLASVPMQ 357 Query: 357 KALKELGEITRSMKVLGCYPSENVVP 382 ALKEL ITR +KVLGCYP E V P Sbjct: 358 LALKELERITRFIKVLGCYPCETVAP 383 Lambda K H 0.318 0.132 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 499 Number of extensions: 13 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 386 Length of database: 659 Length adjustment: 34 Effective length of query: 352 Effective length of database: 625 Effective search space: 220000 Effective search space used: 220000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 52 (24.6 bits)
Align candidate 6936711 Sama_0898 (prephenate dehydratase / chorismate mutase / phospho-2-dehydro-3-deoxyheptonate aldolase (RefSeq))
to HMM TIGR01797 (chorismate mutase (EC 5.4.99.5))
../bin/blast/fastacmd -i /tmp/list.3753.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.3753.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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