Align glutamyl-tRNAGln amidotransferase subunit A (EC 6.3.5.7) (characterized)
to candidate SMc01352 SMc01352 aspartyl/glutamyl-tRNA amidotransferase subunit A
Query= metacyc::MONOMER-13955 (485 letters) >FitnessBrowser__Smeli:SMc01352 Length = 493 Score = 466 bits (1199), Expect = e-136 Identities = 247/483 (51%), Positives = 329/483 (68%), Gaps = 11/483 (2%) Query: 8 ITELKQLIHKKEIKISDLVDESYKRIQAVDDKVQAFLALDEERARAYAKELDEAVDGRSE 67 I E + + KEI +L D I+A ++ + A++A+ E+AR AK D + Sbjct: 9 IAEARAKLSAKEITAVELTDAYLGAIEAANETINAYVAVTPEKAREMAKASDARI-AAGN 67 Query: 68 HGLLFGMPIGVKDNIVTKGLRTTCSSKILENFDPIYDATVVQRLQDAEAVTIGKLNMDEF 127 L G+P+G+KD T+G+ T S IL+ F+P Y++TV Q L + AV +GKLNMDEF Sbjct: 68 AAALEGIPLGIKDLFGTEGIHTQACSHILDGFEPRYESTVTQNLWNDGAVMLGKLNMDEF 127 Query: 128 AMGSSTENSAYKLTKNPW-----NLDTVPGGSSGGSAAAVAAGEVPFSLGSDTGGSIRQP 182 AMGSS E S Y KNPW NLD VPGGSSGGSAAAVAA + +DTGGSIRQP Sbjct: 128 AMGSSNETSYYGPVKNPWRAKGSNLDLVPGGSSGGSAAAVAARLCAGATATDTGGSIRQP 187 Query: 183 ASFCGVVGLKPTYGRVSRYGLVAFASSLDQIGPITRTVEDNAFLLQAISGVDKMDSTSAN 242 A+F G VG+KPTYGR SR+G+VAFASSLDQ GPI R V D A LL++++ +D D+TS + Sbjct: 188 AAFTGTVGIKPTYGRCSRWGVVAFASSLDQAGPIARDVRDAAILLKSMASIDPKDTTSVD 247 Query: 243 VDVPDFLSSLTGDIKGLKIAVPKEYLGEGVGKEARESVLAALKVLEGLGATWEEVSLPHS 302 + VPD+ +++ IKG++I +PKEY +G+ ++ + L GA ++SLPH+ Sbjct: 248 LPVPDYEAAIGQSIKGMRIGIPKEYRVDGMPEDIEALWQQGIAWLRDAGAEIVDISLPHT 307 Query: 303 KYALATYYLLSSSEASANLARFDGIRYGYRTDNADNLIDLYKQTRAEGFGNEVKRRIMLG 362 KYAL YY+++ +EAS+NLAR+DG+RYG R D D +ID+Y++TRA GFG EVKRRIM+G Sbjct: 308 KYALPAYYIVAPAEASSNLARYDGVRYGLRVDGKD-IIDMYEKTRAAGFGQEVKRRIMIG 366 Query: 363 TFALSSGYYDAYYKKAQKVRTLIKKDFEDVFEK-YDVIVGPTTPTPAFKIGEN--TKDPL 419 T+ LS+GYYDAYY +AQKVRTLIK+DFE F+ D I+ P TP+ AF I + DP+ Sbjct: 367 TYVLSAGYYDAYYLRAQKVRTLIKRDFELAFQAGVDAILTPATPSSAFGIADEDLASDPV 426 Query: 420 TMYANDILTIPVNLAGVPGISVPCGL-ADGLPLGLQIIGKHFDESTVYRVAHAFEQATDH 478 MY NDI T+ VN+AG+PGI+VP GL GLPLGLQ+IGK F+E T+++ AH EQA Sbjct: 427 KMYLNDIFTVTVNMAGLPGIAVPGGLDRKGLPLGLQLIGKPFEEETLFKTAHVIEQAAGR 486 Query: 479 HKA 481 A Sbjct: 487 FTA 489 Lambda K H 0.315 0.134 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 610 Number of extensions: 34 Number of successful extensions: 6 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 485 Length of database: 493 Length adjustment: 34 Effective length of query: 451 Effective length of database: 459 Effective search space: 207009 Effective search space used: 207009 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 52 (24.6 bits)
Align candidate SMc01352 SMc01352 (aspartyl/glutamyl-tRNA amidotransferase subunit A)
to HMM TIGR00132 (gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit (EC 6.3.5.-))
../bin/blast/fastacmd -i /tmp/list.32014.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.32014.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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