GapMind for Amino acid biosynthesis

 

Alignments for a candidate for cysE in Sinorhizobium meliloti 1021

Align serine O-acetyltransferase (EC 2.3.1.30) (characterized)
to candidate SMc02113 SMc02113 serine acetyltransferase

Query= BRENDA::C4IRW0
         (281 letters)



>FitnessBrowser__Smeli:SMc02113
          Length = 275

 Score =  392 bits (1006), Expect = e-114
 Identities = 188/258 (72%), Positives = 218/258 (84%)

Query: 20  LDQVDPIWHSIRAEAEEATRNDPVLGAFLYATILNQPSLEEAVMHRIAERLGHPDVSADI 79
           L+ +DPIW S+R EA  A   DP+L AFLY+T++NQ SLE+ V++RI ERL HPD+ A +
Sbjct: 13  LEAIDPIWDSLREEARLAAERDPMLAAFLYSTVVNQHSLEDCVIYRICERLDHPDLQASL 72

Query: 80  LRQTFDTMLEANPEWSHVLRVDIQAVYDRDPAYSRFMDPVLYLKGFHAIQTHRLAHWLYK 139
           L QTF  MLE  PEW  VLRVDIQAVYDRDPA +RFM+PVLY KGFHAIQTHRLAHWL+ 
Sbjct: 73  LHQTFAEMLEDWPEWGAVLRVDIQAVYDRDPACTRFMEPVLYFKGFHAIQTHRLAHWLWN 132

Query: 140 QGRKDFAYYLQSRSSSIFQTDIHPAARLGSGLFLDHATGLVVGETAVVEDNVSILHGVTL 199
           +GRKDFA YLQSRSSS+FQTDI+PAAR+G G+FLDHATGLVVGETAV+ DNVSILHGVTL
Sbjct: 133 RGRKDFALYLQSRSSSVFQTDINPAARIGRGIFLDHATGLVVGETAVIGDNVSILHGVTL 192

Query: 200 GGTGKSSGDRHPKIRQGVLIGAGAKILGNIQVGQCSKIAAGSVVLKSVPHNVTVAGVPAR 259
           GGTGK   DRHPKI  GVLIGAGAKILGNI +G CS++AAGSVVLK+VP   TVAGVPA+
Sbjct: 193 GGTGKEGSDRHPKIGNGVLIGAGAKILGNIHIGHCSRVAAGSVVLKAVPPKSTVAGVPAK 252

Query: 260 IIGETGCTEPSRVMDQML 277
           ++GE GC+EPSR MDQ+L
Sbjct: 253 VVGEAGCSEPSRQMDQIL 270


Lambda     K      H
   0.320    0.135    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 354
Number of extensions: 9
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 275
Length adjustment: 25
Effective length of query: 256
Effective length of database: 250
Effective search space:    64000
Effective search space used:    64000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)

Align candidate SMc02113 SMc02113 (serine acetyltransferase)
to HMM TIGR01172 (cysE: serine O-acetyltransferase (EC 2.3.1.30))

Software error:

../bin/blast/fastacmd -i /tmp/list.19340.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.19340.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.