Align serine O-acetyltransferase (EC 2.3.1.30) (characterized)
to candidate SMc02113 SMc02113 serine acetyltransferase
Query= BRENDA::C4IRW0 (281 letters) >FitnessBrowser__Smeli:SMc02113 Length = 275 Score = 392 bits (1006), Expect = e-114 Identities = 188/258 (72%), Positives = 218/258 (84%) Query: 20 LDQVDPIWHSIRAEAEEATRNDPVLGAFLYATILNQPSLEEAVMHRIAERLGHPDVSADI 79 L+ +DPIW S+R EA A DP+L AFLY+T++NQ SLE+ V++RI ERL HPD+ A + Sbjct: 13 LEAIDPIWDSLREEARLAAERDPMLAAFLYSTVVNQHSLEDCVIYRICERLDHPDLQASL 72 Query: 80 LRQTFDTMLEANPEWSHVLRVDIQAVYDRDPAYSRFMDPVLYLKGFHAIQTHRLAHWLYK 139 L QTF MLE PEW VLRVDIQAVYDRDPA +RFM+PVLY KGFHAIQTHRLAHWL+ Sbjct: 73 LHQTFAEMLEDWPEWGAVLRVDIQAVYDRDPACTRFMEPVLYFKGFHAIQTHRLAHWLWN 132 Query: 140 QGRKDFAYYLQSRSSSIFQTDIHPAARLGSGLFLDHATGLVVGETAVVEDNVSILHGVTL 199 +GRKDFA YLQSRSSS+FQTDI+PAAR+G G+FLDHATGLVVGETAV+ DNVSILHGVTL Sbjct: 133 RGRKDFALYLQSRSSSVFQTDINPAARIGRGIFLDHATGLVVGETAVIGDNVSILHGVTL 192 Query: 200 GGTGKSSGDRHPKIRQGVLIGAGAKILGNIQVGQCSKIAAGSVVLKSVPHNVTVAGVPAR 259 GGTGK DRHPKI GVLIGAGAKILGNI +G CS++AAGSVVLK+VP TVAGVPA+ Sbjct: 193 GGTGKEGSDRHPKIGNGVLIGAGAKILGNIHIGHCSRVAAGSVVLKAVPPKSTVAGVPAK 252 Query: 260 IIGETGCTEPSRVMDQML 277 ++GE GC+EPSR MDQ+L Sbjct: 253 VVGEAGCSEPSRQMDQIL 270 Lambda K H 0.320 0.135 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 354 Number of extensions: 9 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 281 Length of database: 275 Length adjustment: 25 Effective length of query: 256 Effective length of database: 250 Effective search space: 64000 Effective search space used: 64000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 47 (22.7 bits)
Align candidate SMc02113 SMc02113 (serine acetyltransferase)
to HMM TIGR01172 (cysE: serine O-acetyltransferase (EC 2.3.1.30))
../bin/blast/fastacmd -i /tmp/list.19340.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.19340.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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