Align glutamine synthetase (EC 6.3.1.2) (characterized)
to candidate SMc00948 SMc00948 glutamine synthetase
Query= BRENDA::P0A1P6 (469 letters) >FitnessBrowser__Smeli:SMc00948 Length = 469 Score = 636 bits (1641), Expect = 0.0 Identities = 306/468 (65%), Positives = 374/468 (79%), Gaps = 1/468 (0%) Query: 2 SAEHVLTMLNEHEVKFVDLRFTDTKGKEQHVTIPAHQVNAEFFEEGKMFDGSSIGGWKGI 61 +A VL + E++VKFVDLRFTD KGK QHVT+ V+ + F +G MFDGSSIGGWK I Sbjct: 3 TANEVLKQIKENDVKFVDLRFTDPKGKLQHVTMDVVCVDEDMFADGVMFDGSSIGGWKAI 62 Query: 62 NESDMVLMPDASTAVIDPFFADSTLIIRCDILEPGTLQGYDRDPRSIAKRAEDYLRATGI 121 NESDMVLMPD TA +DPFFA ST++I CDIL+P + + Y+RDPR AK+AE YL+A+GI Sbjct: 63 NESDMVLMPDPETAHMDPFFAQSTMVIFCDILDPVSGEAYNRDPRGTAKKAEAYLKASGI 122 Query: 122 ADTVLFGPEPEFFLFDDIRFGASISGSHVAIDDIEGAWNSSTKYEGGNKGHRPGVKGGYF 181 DTV GPE EFF+FDD+++ A + +D E N T YE GN GHRP VKGGYF Sbjct: 123 GDTVFVGPEAEFFVFDDVKYKADPYNTGFKLDSSELPSNDDTDYETGNLGHRPRVKGGYF 182 Query: 182 PVPPVDSAQDIRSEMCLVMEQMGLVVEAHHHEVATAGQNEVATRFNTMTKKADEIQIYKY 241 PVPPVDS+QD+RSEM V+ +MG+ VE HHHEVA A Q+E+ +F+ + + AD++QIYKY Sbjct: 183 PVPPVDSSQDMRSEMLTVLSEMGVTVEKHHHEVAAA-QHELGVKFDALVRNADKMQIYKY 241 Query: 242 VVHNVAHRFGKTATFMPKPMFGDNGSGMHCHMSLAKNGTNLFSGDKYAGLSEQALYYIGG 301 VVH VA+ +GKTATFMPKP+FGDNGSGMH H+S+ K+G F+GD+YAGLSE LY+IGG Sbjct: 242 VVHQVANAYGKTATFMPKPIFGDNGSGMHVHLSIWKDGKPTFAGDEYAGLSESCLYFIGG 301 Query: 302 VIKHAKAINALANPTTNSYKRLVPGYEAPVMLAYSARNRSASIRIPVVASPKARRIEVRF 361 +IKHAKA+NA NP+TNSYKRLVPGYEAPV+LAYSARNRSAS RIP +PKA+R+EVRF Sbjct: 302 IIKHAKALNAFTNPSTNSYKRLVPGYEAPVLLAYSARNRSASCRIPFGTNPKAKRVEVRF 361 Query: 362 PDPAANPYLCFAALLMAGLDGIKNKIHPGEAMDKNLYDLPPEEAKEIPQVAGSLEEALNA 421 PDP ANPYL FAA+LMAGLDGIKNK+HPG+AMDK+LYDLPP+E K+IP V GSL EAL + Sbjct: 362 PDPTANPYLAFAAMLMAGLDGIKNKLHPGKAMDKDLYDLPPKELKKIPTVCGSLREALES 421 Query: 422 LDLDREFLKAGGVFTDEAIDAYIALRREEDDRVRMTPHPVEFELYYSV 469 LD DR+FL AGGVF D+ ID++I L+ +E R MTPHPVEF++YYSV Sbjct: 422 LDKDRKFLTAGGVFDDDQIDSFIELKMQEVMRFEMTPHPVEFDMYYSV 469 Lambda K H 0.318 0.136 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 794 Number of extensions: 28 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 469 Length of database: 469 Length adjustment: 33 Effective length of query: 436 Effective length of database: 436 Effective search space: 190096 Effective search space used: 190096 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 51 (24.3 bits)
Align candidate SMc00948 SMc00948 (glutamine synthetase)
to HMM TIGR00653 (glnA: glutamine synthetase, type I (EC 6.3.1.2))
../bin/blast/fastacmd -i /tmp/list.2078.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.2078.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.