Align ATP phosphoribosyltransferase; ATP-PRT; ATP-PRTase; EC 2.4.2.17 (uncharacterized)
to candidate SMc00917 SMc00917 ATP phosphoribosyltransferase catalytic subunit
Query= curated2:C0RKC9 (231 letters) >FitnessBrowser__Smeli:SMc00917 Length = 231 Score = 316 bits (810), Expect = 2e-91 Identities = 163/231 (70%), Positives = 191/231 (82%), Gaps = 2/231 (0%) Query: 1 MSVTLALPSKGRLKEKTLAVLEKAGYKVVLPDDDRNYRARVEGEDDLDILFLSASEIARK 60 M+VT+ALPSKGR+K++ A+ E+AG K+ DR+YR RVEG DD++I +LSASEIAR+ Sbjct: 1 MTVTIALPSKGRMKDEASAIFERAGMKIAAVGSDRSYRGRVEGWDDVEIAYLSASEIARE 60 Query: 61 LGYGSVDLGVTGEDLVRETLAHADERVAIEAQLGFGHADVVVAVPEVWRDVTTMADLDDV 120 +G G+VD GVTGEDLVRE LA AD RV A+LGFGHADVVVAVPE+W DV TMADL DV Sbjct: 61 IGSGAVDFGVTGEDLVREGLADADARVDFAARLGFGHADVVVAVPEIWYDVDTMADLGDV 120 Query: 121 AADFRQRHGRRLRIATKYWRLTQQFFSQKHGIQVYRIVESLGATEGAPAAGSADMIVDIT 180 AADFR RHGRRL IATKYWRLTQQFFS HGIQ+YRIVESLGATEGAPA+GSAD+IVDIT Sbjct: 121 AADFRARHGRRLAIATKYWRLTQQFFSGSHGIQLYRIVESLGATEGAPASGSADIIVDIT 180 Query: 181 STGSTLRANRLKVLEDGIILRSQACLVSARR-SHTSRRV-EEIAARIRAGL 229 STGSTL+AN LK+L DG+ILRS+ACLV AR+ +H V + I A +RA L Sbjct: 181 STGSTLKANHLKILSDGVILRSEACLVRARKATHEGNPVIDRIVAAVRAVL 231 Lambda K H 0.320 0.135 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 224 Number of extensions: 5 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 231 Length of database: 231 Length adjustment: 23 Effective length of query: 208 Effective length of database: 208 Effective search space: 43264 Effective search space used: 43264 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 46 (22.3 bits)
Align candidate SMc00917 SMc00917 (ATP phosphoribosyltransferase catalytic subunit)
to HMM TIGR00070 (hisG: ATP phosphoribosyltransferase (EC 2.4.2.17))
../bin/blast/fastacmd -i /tmp/list.26721.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.26721.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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