GapMind for Amino acid biosynthesis

 

Alignments for a candidate for hisG in Sinorhizobium meliloti 1021

Align ATP phosphoribosyltransferase; ATP-PRT; ATP-PRTase; EC 2.4.2.17 (uncharacterized)
to candidate SMc00917 SMc00917 ATP phosphoribosyltransferase catalytic subunit

Query= curated2:C0RKC9
         (231 letters)



>FitnessBrowser__Smeli:SMc00917
          Length = 231

 Score =  316 bits (810), Expect = 2e-91
 Identities = 163/231 (70%), Positives = 191/231 (82%), Gaps = 2/231 (0%)

Query: 1   MSVTLALPSKGRLKEKTLAVLEKAGYKVVLPDDDRNYRARVEGEDDLDILFLSASEIARK 60
           M+VT+ALPSKGR+K++  A+ E+AG K+     DR+YR RVEG DD++I +LSASEIAR+
Sbjct: 1   MTVTIALPSKGRMKDEASAIFERAGMKIAAVGSDRSYRGRVEGWDDVEIAYLSASEIARE 60

Query: 61  LGYGSVDLGVTGEDLVRETLAHADERVAIEAQLGFGHADVVVAVPEVWRDVTTMADLDDV 120
           +G G+VD GVTGEDLVRE LA AD RV   A+LGFGHADVVVAVPE+W DV TMADL DV
Sbjct: 61  IGSGAVDFGVTGEDLVREGLADADARVDFAARLGFGHADVVVAVPEIWYDVDTMADLGDV 120

Query: 121 AADFRQRHGRRLRIATKYWRLTQQFFSQKHGIQVYRIVESLGATEGAPAAGSADMIVDIT 180
           AADFR RHGRRL IATKYWRLTQQFFS  HGIQ+YRIVESLGATEGAPA+GSAD+IVDIT
Sbjct: 121 AADFRARHGRRLAIATKYWRLTQQFFSGSHGIQLYRIVESLGATEGAPASGSADIIVDIT 180

Query: 181 STGSTLRANRLKVLEDGIILRSQACLVSARR-SHTSRRV-EEIAARIRAGL 229
           STGSTL+AN LK+L DG+ILRS+ACLV AR+ +H    V + I A +RA L
Sbjct: 181 STGSTLKANHLKILSDGVILRSEACLVRARKATHEGNPVIDRIVAAVRAVL 231


Lambda     K      H
   0.320    0.135    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 224
Number of extensions: 5
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 231
Length adjustment: 23
Effective length of query: 208
Effective length of database: 208
Effective search space:    43264
Effective search space used:    43264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)

Align candidate SMc00917 SMc00917 (ATP phosphoribosyltransferase catalytic subunit)
to HMM TIGR00070 (hisG: ATP phosphoribosyltransferase (EC 2.4.2.17))

Software error:

../bin/blast/fastacmd -i /tmp/list.26721.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.26721.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.