Align 3-isopropylmalate dehydratase large subunit; EC 4.2.1.33 (characterized)
to candidate SMc03823 SMc03823 isopropylmalate isomerase large subunit
Query= CharProtDB::CH_024771 (466 letters) >FitnessBrowser__Smeli:SMc03823 Length = 469 Score = 633 bits (1632), Expect = 0.0 Identities = 313/465 (67%), Positives = 368/465 (79%), Gaps = 1/465 (0%) Query: 3 KTLYEKLFDAHVVYEAENETPLLYIDRHLVHEVTSPQAFDGLRAHGRPVRQPGKTFATMD 62 +TLY+K++D H+V ++ T LLYIDRHLVHEVTSPQAF+GLR GR VR P KT A +D Sbjct: 5 RTLYDKIWDDHLVDSQDDGTCLLYIDRHLVHEVTSPQAFEGLRMAGRKVRAPEKTLAVVD 64 Query: 63 HNVSTQT-KDINACGEMARIQMQELIKNCKEFGVELYDLNHPYQGIVHVMGPEQGVTLPG 121 HNV T + + E +RIQ++ L +N +FGVE Y N QGIVH++GPEQG TLPG Sbjct: 65 HNVPTSPDRHLGIKNEESRIQVEALARNAADFGVEYYSENDKRQGIVHIVGPEQGFTLPG 124 Query: 122 MTIVCGDSHTATHGAFGALAFGIGTSEVEHVLATQTLKQGRAKTMKIEVQGKAAPGITAK 181 MTIVCGDSHT+THGAFGALA GIGTSEVEHVLATQTL Q +AK M + V G+ PG+TAK Sbjct: 125 MTIVCGDSHTSTHGAFGALAHGIGTSEVEHVLATQTLIQKKAKNMLVRVDGQLPPGVTAK 184 Query: 182 DIVLAIIGKTGSAGGTGHVVEFCGEAIRDLSMEGRMTLCNMAIEMGAKAGLVAPDETTFN 241 DI+LAIIG+ G+AGGTGHV+EF GEAIR LSMEGRMT+CNM IE GA+AGL+APDETTF Sbjct: 185 DIILAIIGEIGTAGGTGHVIEFAGEAIRSLSMEGRMTVCNMTIEGGARAGLIAPDETTFE 244 Query: 242 YVKGRLHAPKGKDFDDAVAYWKTLQTDEGATFDTVVTLQAEEISPQVTWGTNPGQVISVN 301 Y+K + APKG+ +D AV YWKTL TDEGA +D VV L A + P V+WG++P V+SV Sbjct: 245 YIKDKPRAPKGEAWDRAVEYWKTLHTDEGAHYDRVVVLDAANLPPIVSWGSSPEDVVSVQ 304 Query: 302 DNIPDPASFADPVERASAEKALAYMGLKPGIPLTEVAIDKVFIGSCTNSRIEDLRAAAEI 361 +P+P D +R S +AL YMGLKPG +T++AID+VFIGSCTN RIEDLRA AE+ Sbjct: 305 GVVPNPDDIQDETKRTSKWRALDYMGLKPGTKITDIAIDRVFIGSCTNGRIEDLRAVAEV 364 Query: 362 AKGRKVAPGVQALVVPGSGPVKAQAEAEGLDKIFIEAGFEWRLPGCSMCLAMNNDRLNPG 421 +GRKVAP V A++VPGSG VK QAEAEGLDKIF EAGF+WR PGCSMCLAMN+DRL PG Sbjct: 365 VEGRKVAPTVSAMIVPGSGLVKEQAEAEGLDKIFKEAGFDWREPGCSMCLAMNDDRLKPG 424 Query: 422 ERCASTSNRNFEGRQGRGGRTHLVSPAMAAAAAVTGHFADIRNIK 466 ERCASTSNRNFEGRQG GRTHL+SPAMAAAAAV GHF DIR K Sbjct: 425 ERCASTSNRNFEGRQGFKGRTHLLSPAMAAAAAVAGHFVDIREWK 469 Lambda K H 0.317 0.134 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 796 Number of extensions: 26 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 466 Length of database: 469 Length adjustment: 33 Effective length of query: 433 Effective length of database: 436 Effective search space: 188788 Effective search space used: 188788 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 51 (24.3 bits)
Align candidate SMc03823 SMc03823 (isopropylmalate isomerase large subunit)
to HMM TIGR00170 (leuC: 3-isopropylmalate dehydratase, large subunit (EC 4.2.1.33))
../bin/blast/fastacmd -i /tmp/list.5816.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.5816.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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