Align acetohydroxyacid isomeroreductase (EC 1.1.1.86) (characterized)
to candidate SMc04346 SMc04346 ketol-acid reductoisomerase
Query= metacyc::MONOMER-18814 (338 letters) >FitnessBrowser__Smeli:SMc04346 Length = 339 Score = 462 bits (1189), Expect = e-135 Identities = 227/339 (66%), Positives = 272/339 (80%), Gaps = 1/339 (0%) Query: 1 MKVFYDKDADLSLIKGKNVTIIGYGSQGHAHALNLKDSGV-NVTVGLRKSGASWNKAANA 59 M+V+YD+DADL+LIK K V IIGYGSQG AHALNLKDSG NV + L+ A+ KA Sbjct: 1 MRVYYDRDADLNLIKSKKVAIIGYGSQGRAHALNLKDSGAQNVAIALKSGSATAKKAEAD 60 Query: 60 GLQVKEVAEAVKGADVVMILLPDEQIADVYKNEVHDNIKEGAALAFAHGFNVHYGAVIPR 119 G +V VAEA AD++M+ PDE AD+YK ++ NI++GAA+AFAHG NVH+G + P+ Sbjct: 61 GFKVMTVAEAAAWADLMMMATPDELQADIYKADIAGNIRDGAAIAFAHGLNVHFGLIEPK 120 Query: 120 ADLDVIMIAPKAPGHTVRATYTQGGGVPHLIAVHQNKSGAARDIALSYATANGGGRAGII 179 A +DV+MIAPK PGHTVR Y +GGGVP L+AVHQ+ SG A D+ALSYA GGGR+GII Sbjct: 121 ASVDVVMIAPKGPGHTVRGEYQKGGGVPCLVAVHQDASGNALDLALSYACGVGGGRSGII 180 Query: 180 ETNFREETETDLFGEQAVLCGGTVELIKAGFETLVEAGYAPEMAYFECLHELKLIVDLIY 239 ETNF+EE ETDLFGEQ VLCGG VELI+AGFETLVEAGYAPEMAYFECLHE+KLIVDLIY Sbjct: 181 ETNFKEECETDLFGEQVVLCGGLVELIRAGFETLVEAGYAPEMAYFECLHEVKLIVDLIY 240 Query: 240 EGGIANMNYSISNNAEYGEYVTGPRVVTEETKKAMKQCLTDIQTGEYAKSFLLENKAGAP 299 EGGIANMNYSISN AE+GEYVTGPR++TE+TK MK+ L DIQTG++ ++ E ++GA Sbjct: 241 EGGIANMNYSISNTAEWGEYVTGPRIITEDTKAEMKRVLKDIQTGKFTSEWMQEYRSGAA 300 Query: 300 TLISRRRLTAEHQIEEVGAKLRAMMPWIAKNKMVDQSKN 338 RR+ HQIEEVGAKLRAMMPWI KNK+VD++KN Sbjct: 301 RFKGIRRVNDSHQIEEVGAKLRAMMPWIGKNKLVDKAKN 339 Lambda K H 0.316 0.133 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 436 Number of extensions: 16 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 338 Length of database: 339 Length adjustment: 28 Effective length of query: 310 Effective length of database: 311 Effective search space: 96410 Effective search space used: 96410 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 49 (23.5 bits)
Align candidate SMc04346 SMc04346 (ketol-acid reductoisomerase)
to HMM TIGR00465 (ilvC: ketol-acid reductoisomerase (EC 1.1.1.86))
../bin/blast/fastacmd -i /tmp/list.15800.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.15800.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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