Align Dihydroxy-acid dehydratase; DAD; EC 4.2.1.9 (characterized)
to candidate SMc04045 SMc04045 dihydroxy-acid dehydratase
Query= SwissProt::P55186 (617 letters) >FitnessBrowser__Smeli:SMc04045 Length = 612 Score = 976 bits (2522), Expect = 0.0 Identities = 490/612 (80%), Positives = 537/612 (87%), Gaps = 4/612 (0%) Query: 1 MPPYRSRTTTHGRNMAGARGLWRATGMKDEDFGKPIIAVANSFTQFVPGHVHLKDLGQLV 60 MP YRSRTTTHGRNMAGARGLWRATGMKD DFGKPIIAV NSFTQFVPGHVHLKDLGQLV Sbjct: 1 MPAYRSRTTTHGRNMAGARGLWRATGMKDSDFGKPIIAVVNSFTQFVPGHVHLKDLGQLV 60 Query: 61 AREIEAAGGVAKEFNTIAVDDGIAMGHGGMLYSLPSRDLIADSVEYMVNAHCADAIVCIS 120 AREIEAAGGVAKEFNTIAVDDGIAMGH GMLYSLPSR++IADSVEYMVNAHCADA+VCIS Sbjct: 61 AREIEAAGGVAKEFNTIAVDDGIAMGHDGMLYSLPSREIIADSVEYMVNAHCADAMVCIS 120 Query: 121 NCDKITPGMLMAAMRLNIPVVFVSGGPMEAGKVTVKGKIRALDLVDAMVVAADDSYSDEE 180 NCDKITPGMLMAA+RLNIP VFVSGGPMEAGKV + GK ALDLVDAMV AADD SDE+ Sbjct: 121 NCDKITPGMLMAALRLNIPAVFVSGGPMEAGKVVLHGKTHALDLVDAMVAAADDKVSDED 180 Query: 181 VEAIEKAACPTCGSCSGMFTANSMNCLTEALGLSLPGNGSVLATHADREALFKEAGRVVV 240 V+ IE++ACPTCGSCSGMFTANSMNCLTEALGLSLPGNGS LATHADR+ LF EAG ++V Sbjct: 181 VQIIERSACPTCGSCSGMFTANSMNCLTEALGLSLPGNGSTLATHADRKRLFVEAGHLIV 240 Query: 241 DLCQRWYEQEDATALPRGIATRAAFENAMSLDIAMGGSTNTVLHLLAAAHEGGIDFSMAD 300 DL +R+YEQED LPR IAT+ AFENAM+LDIAMGGSTNTVLH+LAAA+EG IDF+M D Sbjct: 241 DLARRYYEQEDERVLPRNIATKQAFENAMALDIAMGGSTNTVLHILAAAYEGEIDFTMDD 300 Query: 301 IDRLSRHVPCLSKVAPAKSDVHMEDVHRAGGVMAILGELERGGLIDASQPTVHAPTMGEA 360 IDRLSR VPCLSKVAPAK+DVHMEDVHRAGG+M+ILGEL++GGLI+ PTVHA T+G+A Sbjct: 301 IDRLSRKVPCLSKVAPAKADVHMEDVHRAGGIMSILGELDKGGLINRDCPTVHAETLGDA 360 Query: 361 LARWDIGRTNSQIAHEFFKAAPGGKPTQVAFSQAARWEELDLDRENGVIRSVEHPFSKDG 420 + RWDI RT+S +FF+AAPGG PTQVAFSQ ARW+ELD DRENGVIRSVEHPFSKDG Sbjct: 361 IDRWDITRTSSDTVRKFFRAAPGGIPTQVAFSQEARWDELDTDRENGVIRSVEHPFSKDG 420 Query: 421 GLAVLFGNLAPEGCIVKTAGVDESILTFRGTARVFESQDAAVSGILGGQVKAGEVVVIRY 480 GLAVL GN+A +GCIVKTAGVDESIL F G ARVFESQDAAV GIL ++KAG+VVVIRY Sbjct: 421 GLAVLKGNIALDGCIVKTAGVDESILKFSGPARVFESQDAAVKGILANEIKAGDVVVIRY 480 Query: 481 EGPKGGPGMQEMLYPTTYLKSKGLGAACALVTDGRFSGGTSGLSIGHVSPEAGEGGLIAL 540 EGPKGGPGMQEMLYPT+YLKSKGLG ACAL+TDGRFSGGTSGLSIGHVSPEA GG I L Sbjct: 481 EGPKGGPGMQEMLYPTSYLKSKGLGKACALITDGRFSGGTSGLSIGHVSPEAANGGTIGL 540 Query: 541 VETGDPILIDIPTRGITLEVSDAVLAARREAQLARGKDAWTPL-NRKRDLTPALRAYAAM 599 V GD I IDIP R I+L V +A LAARR Q A+G W P+ RKR +T AL+AYAA Sbjct: 541 VREGDMIDIDIPNRTISLRVDEAELAARRTEQDAKG---WKPVEQRKRRVTTALKAYAAF 597 Query: 600 TTNAARGAVRDV 611 T+A RGAVRD+ Sbjct: 598 ATSADRGAVRDL 609 Lambda K H 0.318 0.134 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 1296 Number of extensions: 39 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 617 Length of database: 612 Length adjustment: 37 Effective length of query: 580 Effective length of database: 575 Effective search space: 333500 Effective search space used: 333500 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 53 (25.0 bits)
Align candidate SMc04045 SMc04045 (dihydroxy-acid dehydratase)
to HMM TIGR00110 (ilvD: dihydroxy-acid dehydratase (EC 4.2.1.9))
../bin/blast/fastacmd -i /tmp/list.1639.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.1639.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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