Align 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (characterized)
to candidate SMc01732 SMc01732 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase
Query= CharProtDB::CH_024869 (274 letters) >FitnessBrowser__Smeli:SMc01732 Length = 296 Score = 326 bits (835), Expect = 4e-94 Identities = 175/280 (62%), Positives = 208/280 (74%), Gaps = 10/280 (3%) Query: 1 MQQLQNIIETAFERRAEITPANADTVTREAVNQVIALLDSGALRVAEKI-DGQWVTHQWL 59 + L IETAFE R + V R+AV + LLDSG +RVAE+ DG W +QWL Sbjct: 17 LASLSQTIETAFEGRDAVNTGTRGAV-RDAVETALNLLDSGKVRVAERSEDGTWTVNQWL 75 Query: 60 KKAVLLSFRINDNQVIEGA--ESRYFDKVPMKFADYDEARFQKEGFRVVPPAAVRQGAFI 117 KKAVLLSFR+N +++ G E+ ++DKV KF + F+K GFR VP VR+ A+I Sbjct: 76 KKAVLLSFRLNPMELVRGGPGEAVWWDKVASKFDGWSVNEFEKAGFRAVPNCVVRRSAYI 135 Query: 118 ARNTVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTI 177 A N VLMPS+VN+GAYV EGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEP+QA PTI Sbjct: 136 APNAVLMPSFVNLGAYVGEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPMQAGPTI 195 Query: 178 IEDNCFIGARSEVVEGVIVEEGSVISMGVYIGQSTRIYDRETGEIHYGRVPAGSVVVSGN 237 IEDNCFIGARSEVVEG IV EGSV+ MGV+IG+ST+I DR TGE+ YG VP SVVV+G+ Sbjct: 196 IEDNCFIGARSEVVEGCIVREGSVLGMGVFIGKSTKIVDRATGEVMYGEVPPYSVVVAGS 255 Query: 238 LPS----KDGK--YSLYCAVIVKKVDAKTRGKVGINELLR 271 + S +G+ +LYCAVIVK+VD KTR K GINELLR Sbjct: 256 MASGSTMANGQPAPNLYCAVIVKRVDEKTRSKTGINELLR 295 Lambda K H 0.318 0.136 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 288 Number of extensions: 11 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 274 Length of database: 296 Length adjustment: 26 Effective length of query: 248 Effective length of database: 270 Effective search space: 66960 Effective search space used: 66960 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 47 (22.7 bits)
Align candidate SMc01732 SMc01732 (2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase)
to HMM TIGR00965 (dapD: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117))
../bin/blast/fastacmd -i /tmp/list.21707.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.21707.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.