GapMind for Amino acid biosynthesis

 

Alignments for a candidate for argB in Sinorhizobium meliloti 1021

Align acetylglutamate kinase (EC 2.7.2.8) (characterized)
to candidate SMc01726 SMc01726 acetylglutamate kinase

Query= BRENDA::Q9HTN2
         (301 letters)



>FitnessBrowser__Smeli:SMc01726
          Length = 295

 Score =  291 bits (744), Expect = 2e-83
 Identities = 141/293 (48%), Positives = 209/293 (71%)

Query: 3   LSRDDAAQVAKVLSEALPYIRRFVGKTLVIKYGGNAMESEELKAGFARDVVLMKAVGINP 62
           +S  ++   A++L++ALPY++R+  KT+V+KYGG+AM + EL   FA D+ L+K  G+NP
Sbjct: 1   MSASESEIQARLLAQALPYMQRYEHKTIVVKYGGHAMGNAELGRAFASDIALLKQSGVNP 60

Query: 63  VVVHGGGPQIGDLLKRLSIESHFIDGMRVTDAATMDVVEMVLGGQVNKDIVNLINRHGGS 122
           +VVHGGGPQIG +L R+ IES F  G+RVTD  T+++VEMVL G +NK+IV LIN+ G  
Sbjct: 61  IVVHGGGPQIGAMLNRMGIESKFEGGLRVTDEKTVEIVEMVLAGSINKEIVALINQTGEW 120

Query: 123 AIGLTGKDAELIRAKKLTVTRQTPEMTKPEIIDIGHVGEVTGVNVGLLNMLVKGDFIPVI 182
           AIGL GKD  ++ A+K   T + P+     ++D+G VG+V  V+  LL++L + + IPVI
Sbjct: 121 AIGLCGKDGNMVFAEKAKKTIRDPDSNIERVLDLGFVGDVVEVDRTLLDLLARSEMIPVI 180

Query: 183 APIGVGSNGESYNINADLVAGKVAEALKAEKLMLLTNIAGLMDKQGQVLTGLSTEQVNEL 242
           AP+  G +G +YNINAD  AG +A AL A +L+ LT++ G+++K+G+++  LS  +   L
Sbjct: 181 APVAPGRDGHTYNINADTFAGAIAGALNATRLLFLTDVPGVLNKKGELIKQLSVAEARAL 240

Query: 243 IADGTIYGGMLPKIRCALEAVQGGVTSAHIIDGRVPNAVLLEIFTDSGVGTLI 295
           IADGTI GGM+PK+   +EA++ GV    I++G+  ++VLLEIFT+ G GTLI
Sbjct: 241 IADGTISGGMIPKVETCIEAIKAGVQGVVILNGKTAHSVLLEIFTEHGAGTLI 293


Lambda     K      H
   0.318    0.138    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 252
Number of extensions: 15
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 301
Length of database: 295
Length adjustment: 26
Effective length of query: 275
Effective length of database: 269
Effective search space:    73975
Effective search space used:    73975
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)

Align candidate SMc01726 SMc01726 (acetylglutamate kinase)
to HMM TIGR00761 (argB: acetylglutamate kinase (EC 2.7.2.8))

Software error:

../bin/blast/fastacmd -i /tmp/list.4097.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.4097.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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