Align acetylglutamate kinase (EC 2.7.2.8) (characterized)
to candidate SMc01726 SMc01726 acetylglutamate kinase
Query= BRENDA::Q9HTN2 (301 letters) >FitnessBrowser__Smeli:SMc01726 Length = 295 Score = 291 bits (744), Expect = 2e-83 Identities = 141/293 (48%), Positives = 209/293 (71%) Query: 3 LSRDDAAQVAKVLSEALPYIRRFVGKTLVIKYGGNAMESEELKAGFARDVVLMKAVGINP 62 +S ++ A++L++ALPY++R+ KT+V+KYGG+AM + EL FA D+ L+K G+NP Sbjct: 1 MSASESEIQARLLAQALPYMQRYEHKTIVVKYGGHAMGNAELGRAFASDIALLKQSGVNP 60 Query: 63 VVVHGGGPQIGDLLKRLSIESHFIDGMRVTDAATMDVVEMVLGGQVNKDIVNLINRHGGS 122 +VVHGGGPQIG +L R+ IES F G+RVTD T+++VEMVL G +NK+IV LIN+ G Sbjct: 61 IVVHGGGPQIGAMLNRMGIESKFEGGLRVTDEKTVEIVEMVLAGSINKEIVALINQTGEW 120 Query: 123 AIGLTGKDAELIRAKKLTVTRQTPEMTKPEIIDIGHVGEVTGVNVGLLNMLVKGDFIPVI 182 AIGL GKD ++ A+K T + P+ ++D+G VG+V V+ LL++L + + IPVI Sbjct: 121 AIGLCGKDGNMVFAEKAKKTIRDPDSNIERVLDLGFVGDVVEVDRTLLDLLARSEMIPVI 180 Query: 183 APIGVGSNGESYNINADLVAGKVAEALKAEKLMLLTNIAGLMDKQGQVLTGLSTEQVNEL 242 AP+ G +G +YNINAD AG +A AL A +L+ LT++ G+++K+G+++ LS + L Sbjct: 181 APVAPGRDGHTYNINADTFAGAIAGALNATRLLFLTDVPGVLNKKGELIKQLSVAEARAL 240 Query: 243 IADGTIYGGMLPKIRCALEAVQGGVTSAHIIDGRVPNAVLLEIFTDSGVGTLI 295 IADGTI GGM+PK+ +EA++ GV I++G+ ++VLLEIFT+ G GTLI Sbjct: 241 IADGTISGGMIPKVETCIEAIKAGVQGVVILNGKTAHSVLLEIFTEHGAGTLI 293 Lambda K H 0.318 0.138 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 252 Number of extensions: 15 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 301 Length of database: 295 Length adjustment: 26 Effective length of query: 275 Effective length of database: 269 Effective search space: 73975 Effective search space used: 73975 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 48 (23.1 bits)
Align candidate SMc01726 SMc01726 (acetylglutamate kinase)
to HMM TIGR00761 (argB: acetylglutamate kinase (EC 2.7.2.8))
../bin/blast/fastacmd -i /tmp/list.4097.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.4097.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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