Align glutamyl-tRNAGln amidotransferase subunit A (EC 6.3.5.7) (characterized)
to candidate Synpcc7942_2117 Synpcc7942_2117 aspartyl/glutamyl-tRNA amidotransferase subunit A
Query= metacyc::MONOMER-13955 (485 letters) >FitnessBrowser__SynE:Synpcc7942_2117 Length = 479 Score = 550 bits (1417), Expect = e-161 Identities = 278/479 (58%), Positives = 361/479 (75%), Gaps = 4/479 (0%) Query: 8 ITELKQLIHKKEIKISDLVDESYKRIQAVDDKVQAFLALDEERARAYAKELDEAVDGRSE 67 I EL + +KE ++ + + +RI+ ++ ++++FL + ++A A AK +D+ + E Sbjct: 4 IRELHSQLVRKERSAVEIAEAALQRIETLEPQLKSFLHVTADQAIAQAKAVDQRIAAGEE 63 Query: 68 HGLLFGMPIGVKDNIVTKGLRTTCSSKILENFDPIYDATVVQRLQDAEAVTIGKLNMDEF 127 LL G+PIG+KDN+ T+G+ TTC+SKIL+ F P Y++TV QRL +A AV +GK N+DEF Sbjct: 64 ISLLAGIPIGIKDNLCTRGIPTTCASKILQGFVPPYESTVTQRLAEAGAVAVGKTNLDEF 123 Query: 128 AMGSSTENSAYKLTKNPWNLDTVPGGSSGGSAAAVAAGEVPFSLGSDTGGSIRQPASFCG 187 AMGSSTENSAY+ T NPW+L VPGGSSGGSAAAVAA E +LGSDTGGSIRQPA+FCG Sbjct: 124 AMGSSTENSAYQTTANPWDLTRVPGGSSGGSAAAVAADECVVALGSDTGGSIRQPAAFCG 183 Query: 188 VVGLKPTYGRVSRYGLVAFASSLDQIGPITRTVEDNAFLLQAISGVDKMDSTSANVDVPD 247 VVGLKPTYG VSRYGLVA+ASSLDQIGP +R+VED A LL AI+G D D+TS V+VPD Sbjct: 184 VVGLKPTYGLVSRYGLVAYASSLDQIGPFSRSVEDTAILLGAIAGHDPKDATSLKVEVPD 243 Query: 248 FLSSLTGDIKGLKIAVPKEYLGEGVGKEARESVLAALKVLEGLGATWEEVSLPHSKYALA 307 + L + G+K+ V E + + A +++ AAL+VL+GLGA E+S P Y L Sbjct: 244 YTQFLKPSLAGIKVGVITETVTD---SPAGQAMQAALEVLQGLGAEIREISCPRFAYGLP 300 Query: 308 TYYLLSSSEASANLARFDGIRYGYRTDNADNLIDLYKQTRAEGFGNEVKRRIMLGTFALS 367 YY+++ SEASANLAR+DG++YGYR + A+ LID+Y +TRAEGFG+EVKRRIM+GT+ALS Sbjct: 301 AYYIIAPSEASANLARYDGVKYGYRVEEAETLIDMYCRTRAEGFGSEVKRRIMIGTYALS 360 Query: 368 SGYYDAYYKKAQKVRTLIKKDFEDVFEKYDVIVGPTTPTPAFKIGENTKDPLTMYANDIL 427 +GYYDAYY KAQKVRTLIK+DFE F + DV+V PTTPT AFK GE T DPL+MY +D++ Sbjct: 361 AGYYDAYYLKAQKVRTLIKQDFEAAFAEVDVLVSPTTPTTAFKAGEKTADPLSMYLSDLM 420 Query: 428 TIPVNLAGVPGISVPCGLAD-GLPLGLQIIGKHFDESTVYRVAHAFEQATDHHKAKPEL 485 TIPVNLAG+PG+S+PCG + GLP GLQIIG E V A+A+EQAT+ H +P L Sbjct: 421 TIPVNLAGLPGLSLPCGFDEAGLPYGLQIIGNVLREDQVLHTAYAYEQATEWHLRQPAL 479 Lambda K H 0.315 0.134 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 616 Number of extensions: 17 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 485 Length of database: 479 Length adjustment: 34 Effective length of query: 451 Effective length of database: 445 Effective search space: 200695 Effective search space used: 200695 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 52 (24.6 bits)
Align candidate Synpcc7942_2117 Synpcc7942_2117 (aspartyl/glutamyl-tRNA amidotransferase subunit A)
to HMM TIGR00132 (gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit (EC 6.3.5.-))
../bin/blast/fastacmd -i /tmp/list.1533.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.1533.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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