GapMind for Amino acid biosynthesis

 

Alignments for a candidate for gatC in Synechococcus elongatus PCC 7942

Align glutamyl-tRNAGln amidotransferase subunit C (EC 6.3.5.7) (characterized)
to candidate Synpcc7942_2322 Synpcc7942_2322 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C

Query= metacyc::MONOMER-13957
         (96 letters)



>FitnessBrowser__SynE:Synpcc7942_2322
          Length = 96

 Score = 85.9 bits (211), Expect = 1e-22
 Identities = 41/92 (44%), Positives = 64/92 (69%)

Query: 4  ISIEEVKHVAHLARLAITEEEAKMFTEQLDSIISFAEELNEVNTDNVEPTTHVLKMKNVM 63
          I++E+V  VAHLARLA+T EE + FT QL+SI+ + E+L+E+ T++V+PTT  +++ NV 
Sbjct: 3  ITLEQVHKVAHLARLALTPEEEQQFTTQLNSILEYVEQLSELPTEDVQPTTRAIEVVNVT 62

Query: 64 REDEAGKGLPVEDVMKNAPDHKDGYIRVPSIL 95
          R D+       E+++  APD +  + RVP IL
Sbjct: 63 RPDDVKPAENREELLSIAPDQEGDFFRVPQIL 94


Lambda     K      H
   0.312    0.130    0.349 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 3
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 96
Length of database: 96
Length adjustment: 10
Effective length of query: 86
Effective length of database: 86
Effective search space:     7396
Effective search space used:     7396
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (20.5 bits)
S2: 39 (19.6 bits)

Align candidate Synpcc7942_2322 Synpcc7942_2322 (aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C)
to HMM TIGR00135 (gatC: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit (EC 6.3.5.-))

Software error:

../bin/blast/fastacmd -i /tmp/list.4303.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.4303.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.