Align Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 (uncharacterized)
to candidate Synpcc7942_2467 Synpcc7942_2467 shikimate 5-dehydrogenase
Query= curated2:Q8YVC1 (289 letters) >FitnessBrowser__SynE:Synpcc7942_2467 Length = 288 Score = 318 bits (816), Expect = 7e-92 Identities = 161/287 (56%), Positives = 209/287 (72%), Gaps = 3/287 (1%) Query: 2 ITGKTKLLGVIGHPVEHSLSPVMHNAAIAQLGLDYVYLPFPIAPDNLEAAIALLATIGVV 61 +TG+T+LLG+IG P+EHSLSP++ NAAIA+LGLDY Y+PFP+ +L A+A LA IGV Sbjct: 4 LTGRTRLLGIIGDPIEHSLSPLIQNAAIAELGLDYCYVPFPVKGADLATALAGLAAIGVQ 63 Query: 62 GFSVTIPHKQAIIPLLSEISPVAQAIGAVNTVTRQNNQWVGTNTDIEGFIAPLQTTYKRD 121 GF+VTIPHKQA++PLLS++S +AQ++G+VNTV + WVGTNTD+ GF+APLQ T + D Sbjct: 64 GFNVTIPHKQAVMPLLSQVSELAQSVGSVNTVWQTEQGWVGTNTDVLGFLAPLQ-TLRSD 122 Query: 122 WSQQIAVILGNGGAARAVVAGCYQLGFAEIHVVGRNVQRLEEFRHSWENSPIAENLQVHT 181 WS V+LG GGAARAVVAGC QLG + I V R+ Q+ + F+ SW + A++L +H Sbjct: 123 WSGCRVVLLGCGGAARAVVAGCLQLGCSAIATVVRDAQKGDAFQQSWGDR--ADSLTIHD 180 Query: 182 WDYLAKLIPQANLLVNTTPIGMYPQVDESPLSAEELVNLQTGTIAYDLIYIPKPTQFLQK 241 W + ++ A+L+VNTTP+GM P ++ SPL L+ TIAYDLIY P PT+FLQ+ Sbjct: 181 WSDIPDVLSTADLVVNTTPLGMDPHIERSPLDNSAAQQLRPETIAYDLIYTPSPTRFLQQ 240 Query: 242 AQQQGAIIIDGLEMLVQQGVAALKIWLQQDDIPVDVMRQALIKHLGL 288 A QG IDGLEMLVQQG A LKIW + +PVD MR L HLGL Sbjct: 241 AIAQGCHAIDGLEMLVQQGAAGLKIWTGAEAVPVDTMRSVLNAHLGL 287 Lambda K H 0.320 0.136 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 291 Number of extensions: 9 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 289 Length of database: 288 Length adjustment: 26 Effective length of query: 263 Effective length of database: 262 Effective search space: 68906 Effective search space used: 68906 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 48 (23.1 bits)
Align candidate Synpcc7942_2467 Synpcc7942_2467 (shikimate 5-dehydrogenase)
to HMM TIGR00507 (aroE: shikimate dehydrogenase (EC 1.1.1.25))
../bin/blast/fastacmd -i /tmp/list.5711.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.5711.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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