Align cysteine synthase (EC 2.5.1.47) (characterized)
to candidate Synpcc7942_B2623 Synpcc7942_B2623 cysteine synthase A
Query= BRENDA::P9WP55 (310 letters) >FitnessBrowser__SynE:Synpcc7942_B2623 Length = 329 Score = 315 bits (807), Expect = 9e-91 Identities = 158/309 (51%), Positives = 215/309 (69%), Gaps = 2/309 (0%) Query: 3 IAEDITQLIGRTPLVRLRRVTD--GAVADIVAKLEFFNPANSVKDRIGVAMLQAAEQAGL 60 I +T+ IG TPLVRL+ GA+A+++ KLE+ NP SVKDR ++++Q+A GL Sbjct: 4 ILNRLTEWIGNTPLVRLQETAQQYGAIAEVLLKLEYLNPLGSVKDRTALSLIQSARSQGL 63 Query: 61 IKPDTIILEPTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGAD 120 I T ++EPT+GNTGI LA AA R +L MP+ +S ER L + GA+++LTP A+ Sbjct: 64 ITAGTTLIEPTTGNTGIGLAFAAAAEQLRLILVMPDRVSAERIRLAKLLGAKVVLTPAAE 123 Query: 121 GMSGAIAKAEELAKTDQRYFVPQQFENPANPAIHRVTTAEEVWRDTDGKVDIVVAGVGTG 180 M G IAKA+ L + + QQF+NPANP+IH+ TT E+WRDTDG+VDIVVAGVGTG Sbjct: 124 AMLGCIAKAQALQQQIPDSVILQQFQNPANPSIHQATTGPEIWRDTDGEVDIVVAGVGTG 183 Query: 181 GTITGVAQVIKERKPSARFVAVEPAASPVLSGGQKGPHPIQGIGAGFVPPVLDQDLVDEI 240 GT+ G+++ +K +P + +AV+PA SPVLSGG G H + G+G FV P++D+ L+DEI Sbjct: 184 GTLMGISRYLKPLRPRLQSIAVQPARSPVLSGGAAGSHQLTGMGPNFVSPLVDRSLIDEI 243 Query: 241 ITVGNEDALNVARRLAREEGLLVGISSGAATVAALQVARRPENAGKLIVVVLPDFGERYL 300 ++ EDA+ V R A EG+ +G+SSGA AALQVA+RPENAGK IV V P ERYL Sbjct: 244 LSAYEEDAIAVIRTCAAREGIPLGVSSGAIVWAALQVAKRPENAGKRIVAVCPSGSERYL 303 Query: 301 STPLFADVA 309 S+ L AD++ Sbjct: 304 SSTLLADIS 312 Lambda K H 0.318 0.136 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 327 Number of extensions: 14 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 310 Length of database: 329 Length adjustment: 28 Effective length of query: 282 Effective length of database: 301 Effective search space: 84882 Effective search space used: 84882 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 48 (23.1 bits)
Align candidate Synpcc7942_B2623 Synpcc7942_B2623 (cysteine synthase A)
to HMM TIGR01139 (cysK: cysteine synthase A (EC 2.5.1.47))
../bin/blast/fastacmd -i /tmp/list.18737.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.18737.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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