GapMind for Amino acid biosynthesis

 

Alignments for a candidate for hisD in Synechococcus elongatus PCC 7942

Align histidinol dehydrogenase (EC 1.1.1.23) (characterized)
to candidate Synpcc7942_1519 Synpcc7942_1519 histidinol dehydrogenase

Query= BRENDA::Q8G2R2
         (430 letters)



>FitnessBrowser__SynE:Synpcc7942_1519
          Length = 434

 Score =  390 bits (1003), Expect = e-113
 Identities = 205/398 (51%), Positives = 277/398 (69%), Gaps = 1/398 (0%)

Query: 31  DRAVREIVDRVRREGDSALLDYSRRFDRIDLEKTGIAVTEAEIDAAFDAAPASTVEALKL 90
           + +VREIV  V+R GD+AL+++++ FD   L+   + V+ AE+DAA+   P   ++A++L
Sbjct: 31  EASVREIVQAVQRRGDAALIEFTQEFDGFALQAENLRVSGAELDAAYQQIPKELLDAIRL 90

Query: 91  ARDRIEKHHARQLPKDDRYTDALGVELGSRWTAIEAVGLYVPGGTASYPSSVLMNAMPAK 150
           A  +IE  H +++PK      A G  LG R+T ++  GLYVPGG A+YPS+VLMNA+PAK
Sbjct: 91  AHHQIEAFHRQRVPKSWVQFGADGEVLGKRYTPVDRAGLYVPGGRAAYPSTVLMNAVPAK 150

Query: 151 VAGVDRIVMVVP-APDGNLNPLVLVAARLAGVSEIYRVGGAQAIAALAYGTETIRPVAKI 209
           VAGV+R+V+  P  PDG+LNP VLVAA+ AG+ EIYRVGGAQAIAALAYGT TI  V  I
Sbjct: 151 VAGVERVVITTPPGPDGSLNPAVLVAAQEAGIEEIYRVGGAQAIAALAYGTATIPKVDVI 210

Query: 210 VGPGNAYVAAAKRIVFGTVGIDMIAGPSEVLIVADKDNNPDWIAADLLAQAEHDTAAQSI 269
            GPGN YV  AK++V+GTVGID +AGPSEVLI+AD+  NP W+AADLLAQAEHD  A +I
Sbjct: 211 SGPGNIYVTLAKKLVYGTVGIDSLAGPSEVLIIADRSANPRWVAADLLAQAEHDPLAAAI 270

Query: 270 LMTNDEAFAHAVEEAVERQLHTLARTETASASWRDFGAVILVKDFEDAIPLANRIAAEHL 329
           L+T D   A  V   VERQL    R      +   +G  I+V   E A+ L+N+ A EHL
Sbjct: 271 LITPDLELATQVGFEVERQLQDHPRRLVTEKAIAHYGLAIVVDSLETAVKLSNQFAPEHL 330

Query: 330 EIAVADAEAFVPRIRNAGSIFIGGYTPEVIGDYVGGCNHVLPTARSARFSSGLSVLDYMK 389
           E+ V D  A V ++R+AG+IF+G  TPE IGDYV G NH LPT+ +AR++S LSV  ++K
Sbjct: 331 ELEVEDPWALVEQVRHAGAIFLGSLTPEAIGDYVAGPNHTLPTSGAARYASALSVETFLK 390

Query: 390 RTSLLKLGSEQLRALGPAAIEIARAEGLDAHAQSVAIR 427
            +SL++  +  L+ +  A   +A AEGL++HA+SV +R
Sbjct: 391 SSSLIEYTAASLQRVARAVDVLATAEGLESHAESVRLR 428


Lambda     K      H
   0.318    0.134    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 485
Number of extensions: 21
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 434
Length adjustment: 32
Effective length of query: 398
Effective length of database: 402
Effective search space:   159996
Effective search space used:   159996
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)

Align candidate Synpcc7942_1519 Synpcc7942_1519 (histidinol dehydrogenase)
to HMM TIGR00069 (hisD: histidinol dehydrogenase (EC 1.1.1.23))

Software error:

../bin/blast/fastacmd -i /tmp/list.4147.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.4147.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.