Align histidinol dehydrogenase (EC 1.1.1.23) (characterized)
to candidate Synpcc7942_1519 Synpcc7942_1519 histidinol dehydrogenase
Query= BRENDA::Q8G2R2 (430 letters) >FitnessBrowser__SynE:Synpcc7942_1519 Length = 434 Score = 390 bits (1003), Expect = e-113 Identities = 205/398 (51%), Positives = 277/398 (69%), Gaps = 1/398 (0%) Query: 31 DRAVREIVDRVRREGDSALLDYSRRFDRIDLEKTGIAVTEAEIDAAFDAAPASTVEALKL 90 + +VREIV V+R GD+AL+++++ FD L+ + V+ AE+DAA+ P ++A++L Sbjct: 31 EASVREIVQAVQRRGDAALIEFTQEFDGFALQAENLRVSGAELDAAYQQIPKELLDAIRL 90 Query: 91 ARDRIEKHHARQLPKDDRYTDALGVELGSRWTAIEAVGLYVPGGTASYPSSVLMNAMPAK 150 A +IE H +++PK A G LG R+T ++ GLYVPGG A+YPS+VLMNA+PAK Sbjct: 91 AHHQIEAFHRQRVPKSWVQFGADGEVLGKRYTPVDRAGLYVPGGRAAYPSTVLMNAVPAK 150 Query: 151 VAGVDRIVMVVP-APDGNLNPLVLVAARLAGVSEIYRVGGAQAIAALAYGTETIRPVAKI 209 VAGV+R+V+ P PDG+LNP VLVAA+ AG+ EIYRVGGAQAIAALAYGT TI V I Sbjct: 151 VAGVERVVITTPPGPDGSLNPAVLVAAQEAGIEEIYRVGGAQAIAALAYGTATIPKVDVI 210 Query: 210 VGPGNAYVAAAKRIVFGTVGIDMIAGPSEVLIVADKDNNPDWIAADLLAQAEHDTAAQSI 269 GPGN YV AK++V+GTVGID +AGPSEVLI+AD+ NP W+AADLLAQAEHD A +I Sbjct: 211 SGPGNIYVTLAKKLVYGTVGIDSLAGPSEVLIIADRSANPRWVAADLLAQAEHDPLAAAI 270 Query: 270 LMTNDEAFAHAVEEAVERQLHTLARTETASASWRDFGAVILVKDFEDAIPLANRIAAEHL 329 L+T D A V VERQL R + +G I+V E A+ L+N+ A EHL Sbjct: 271 LITPDLELATQVGFEVERQLQDHPRRLVTEKAIAHYGLAIVVDSLETAVKLSNQFAPEHL 330 Query: 330 EIAVADAEAFVPRIRNAGSIFIGGYTPEVIGDYVGGCNHVLPTARSARFSSGLSVLDYMK 389 E+ V D A V ++R+AG+IF+G TPE IGDYV G NH LPT+ +AR++S LSV ++K Sbjct: 331 ELEVEDPWALVEQVRHAGAIFLGSLTPEAIGDYVAGPNHTLPTSGAARYASALSVETFLK 390 Query: 390 RTSLLKLGSEQLRALGPAAIEIARAEGLDAHAQSVAIR 427 +SL++ + L+ + A +A AEGL++HA+SV +R Sbjct: 391 SSSLIEYTAASLQRVARAVDVLATAEGLESHAESVRLR 428 Lambda K H 0.318 0.134 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 485 Number of extensions: 21 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 430 Length of database: 434 Length adjustment: 32 Effective length of query: 398 Effective length of database: 402 Effective search space: 159996 Effective search space used: 159996 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 51 (24.3 bits)
Align candidate Synpcc7942_1519 Synpcc7942_1519 (histidinol dehydrogenase)
to HMM TIGR00069 (hisD: histidinol dehydrogenase (EC 1.1.1.23))
../bin/blast/fastacmd -i /tmp/list.4147.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.4147.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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